Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00542 ATGAGCGGTAGCAGTAGCAGATTTCCATTTACAGTAGCTCAGTGGCACGAACTTGAACTCCAAGCTCTGATTTTTAAGTACATGGTTTCAGGCATTCCCATTCCTCCCGATCTACTCTTCAGCATCAAAAGAAACAGCTTTGATTCGCATCTCGCCCCTCGCCATGTGCAACCGCAGCAAGTGGGATGGAACTATTTAAACACGGGTCTGAGGAGAAAAATAGACCCAGAGCCTGGGCGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGCTCAAAAGAGGCATACCCAGATTCCAAGTACTGCGAGAGACACATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTAGTTTCAAAAGCACAGCCGGCCTGGAATCAAACCTTTCGCCGTCACCAATCCCCTCCTCCATGCCCAAGAACCCATTTTCTCCCTCTACAAATCCTCACTCTCTCTCCTCTGATACACTGCACCATTACCCCCAGCTTCACCATTCTTCGTGCTTCAATAACATCCTTCTTTCGTCTTCTTCTCTCCTGGACTCCTGCTCTTACTCCCAGCCTGCAACAGATTTCAGAAGAAGTAGGCTAGCTTATCCAATGAAAGATGAAATGGGTGAGCGTCCTTTCTTCTCAGAATCTTCAGGAACGATGAGAAGCTTTTTAGCTTCATCCATGGAGGATACATGGCAGTTGACACCTCTAACAATGAGTTGCTCTTCTTCCTCGCCCAAACAAAGAAACTCTTCCAGTTTACAGAGTGATGATTACTCATATTTACAGCTTCAAAGCCTCACTCAAGACCACCTCGATAAAGCCCTTCCAATGGCGATGAAGATGGACGGAGAAGAAGAGGCGCCGAAGATCGTCCATCGGTTCTTCGACGAATGGCCACCGAAACACTGA 912 47.48 MSGSSSRFPFTVAQWHELELQALIFKYMVSGIPIPPDLLFSIKRNSFDSHLAPRHVQPQQVGWNYLNTGLRRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVSFKSTAGLESNLSPSPIPSSMPKNPFSPSTNPHSLSSDTLHHYPQLHHSSCFNNILLSSSSLLDSCSYSQPATDFRRSRLAYPMKDEMGERPFFSESSGTMRSFLASSMEDTWQLTPLTMSCSSSSPKQRNSSSLQSDDYSYLQLQSLTQDHLDKALPMAMKMDGEEEAPKIVHRFFDEWPPKH 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3704465 3705538 - Bpe022641.1 Bpe08g00542 107418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00542 303 PANTHER - 6 303 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bpe08g00542 303 PANTHER GROWTH-REGULATING FACTOR 6 6 303 - -
Bpe08g00542 303 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bpe08g00542 303 Pfam WRC 76 118 IPR014977 -
Bpe08g00542 303 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Bpe08g00542 303 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bpe08g00542 303 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bpe08g00542 303 MobiDBLite consensus disorder prediction 126 155 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00613 Bpe08g00542 CCT
Bpe01g00613 Bpe08g00542 ECH
Bpe08g00542 Bpe13g01232 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00542 Bpe-Chr8:3704465 Bpe12g00610 Bpe-Chr12:11815549 2.61E-52 dispersed
Bpe01g00613 Bpe-Chr1:4050465 Bpe08g00542 Bpe-Chr8:3704465 1.01E-136 wgd
Bpe13g01232 Bpe-Chr13:17596724 Bpe08g00542 Bpe-Chr8:3704465 1.60E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21752 PF08879 WRC 5.80E-21 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00542 - - egr:104436427 301.597