Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00552 ATGGCCGCCTCTAATTCGAACTCAACTGGTAATCTCAACGCCCAAAATTCTCTCCAGTCCATCTGCTACGAACGCGGTTCCCTTCGTCTTCTCGATCAGAGAAAGCTTCCTCTTGAAACCTTTTATCTGGATATCAAGGATGCAGCAGGTGGATGGCATGCGATAAGAGATATGGTGGTCCGTGGAGCACCTGCTATTGCAATTGCAGCCGCTCTCTCGTTAGCTGTGGAAGTTTTTAACTTAAGGGATTTTGGAGGGACCTCAAATGATGCAACTATTTTTCTTAGCATTAAGCTGGATTACCTAGTTTCCAGCCGGCCAACTGCAGTGAATCTCTCTGATGCTGCTACAAAACTCAAACAAATAGTATCAGAGGCATGTTCTACTTCATTGAAAGCAAGCAGCATTTTCCAGGCCTACATTGAGGCTGCTGAATTGATGCTTAAGGACGATGTTGCTTCAAATAAAGCGATTGGATCATATGGAGCAGATTTTATCCAGGATCAACTGAAATCATTGAACAAACTCTCTGTTCTAACCCACTGTAACACTGGCAGTCTTGCGACGGCTGGATATGGAACTGCCCTGGGTGTGATCCGTTCACTTCACGCTGAAGGGGTCTTAGAAAGGGCCTACTGTACTGAAACAAGGCCATTTAATCAAGGATCCAGATTGACAGCATATGAGTTGGTGCATGAAAAAATACCTGCCACTCTCGTTGCAGATTCTGCTGCAGCTGCACTTATGCAACTAGGTCGTGTGAATGCCGTCATTGTCGGAGCAGATCGTGTGGCTGCCAATGGTGATACGGCTAACAAGATTGGAACTTACAATCTGGCCTTGAGTGCAATGTATCACAAGGTCCCATTTTATGTGGCAGCCCCATTGACTTCCGTAGATTTATCCCTTTCTTCTGGCCAAGAGATCGTCATTGAAGAACGGTCGCCTAAAGAGTTATTGCACTCCCGGGGCGGTCTTGGGGAGCAAGTTGCAGCTTCTGGAATCTCGGTTTGGAATCCGGCATTTGATGTTACCCCAGCTTCTCTCATATCAGGGATCATAACAGAAAAGGTTCTCGTTCTCTCTCTCTCTCTCTATCTACACCATGGAGTGGTAGTAGTAGTAATAACAGTATGA 1137 45.91 MAASNSNSTGNLNAQNSLQSICYERGSLRLLDQRKLPLETFYLDIKDAAGGWHAIRDMVVRGAPAIAIAAALSLAVEVFNLRDFGGTSNDATIFLSIKLDYLVSSRPTAVNLSDAATKLKQIVSEACSTSLKASSIFQAYIEAAELMLKDDVASNKAIGSYGADFIQDQLKSLNKLSVLTHCNTGSLATAGYGTALGVIRSLHAEGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLVADSAAAALMQLGRVNAVIVGADRVAANGDTANKIGTYNLALSAMYHKVPFYVAAPLTSVDLSLSSGQEIVIEERSPKELLHSRGGLGEQVAASGISVWNPAFDVTPASLISGIITEKVLVLSLSLYLHHGVVVVVITV 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3846077 3849199 - Bpe022652.1 Bpe08g00552 107428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00552 378 Gene3D - 16 173 IPR027363 -
Bpe08g00552 378 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 18 366 IPR005251 -
Bpe08g00552 378 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 357 IPR037171 -
Bpe08g00552 378 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 48 358 IPR011559 GO:0044249
Bpe08g00552 378 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 19 358 IPR005251 -
Bpe08g00552 378 Gene3D - 174 365 IPR042529 -
Bpe08g00552 378 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 16 359 - -
Bpe08g00552 378 Pfam Initiation factor 2 subunit family 60 357 IPR000649 GO:0044237
Bpe08g00552 378 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 16 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00552 Bpe-Chr8:3846077 Bpe13g01086 Bpe-Chr13:16402685 3.64E-14 dispersed
Bpe06g00817 Bpe-Chr6:18325430 Bpe08g00552 Bpe-Chr8:3846077 6.43E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00552 K08963 - csv:101210526 548.51