Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe08g00556 | ATGGATGCGGTTTTAGCAGCCCCAGATTATAGCATGCGACGTTTCGTTATATACATCAAAAAGGGTGTCTACAGAGAATACGTCGAGATTAAGAAGAAGAAATGGAACCTCGTGATGATCGGAGATGGAATGGGCGCTACTGTCATAACCGGTAATCGGAGTTTCGTCGACGGATGGACAACTTTCCGGTCGGCAACTTTTGCCGTGAGCGGGAGAGGATTCATAGCGAGAGATATAACGTTCGAGAACACTGCCGGACCGGCGAAGCACCAGGCGGTGGCCCTCAGATCGGACTCCGACCTATCGGTATGTTTCAGGTGCGACATTAGAGGCTACCAAGACACGCTCTACACTCACACGATGCGCCAGTTCTACCGAGAATGTCGGATTAGCGGCACCGTCGATTTCCTCTTCGGAGACGGGACAGTCGTTTTCCAAAAATGCCTATTTCTTGCAAGAAAAGGCCTTCCAAATCAGAAAAACACCATCACTGCTCAAGGCCGGAAAGATCCAAATCAGCCCAGCGGCTTCTCCATTCAATTCTGCAACTTTACGGCGGATTCCGACCTGCAGGTCTATCTCAACTCCACGGCCACGTACCTCGGCCGGCCGTGGAAGCCATATTCACGCACCATTATCATGCAGTCTTACATGAGTAATGCCATCAGGCCAGAAGGGTGGCTCGAGTGGAATGGCAGTCTACATTTGAGTACCCTGTACTATGCGGAGTTTTCAAACTATGGGCCGGGAGCAATGGCAGGGAGCAGGGTCAAGTGGCCGGGCTACCATGCATTTAACCAGTCCGCTCAGGCTGCTAACTACACGGTGGCGCAATTTATTGAGGGAGACCTGTGGTTGCCGTCCACCGGCGTTAAATACACGGCTGGGTTGGGCGTTTGA | 900 | 52.0 | MDAVLAAPDYSMRRFVIYIKKGVYREYVEIKKKKWNLVMIGDGMGATVITGNRSFVDGWTTFRSATFAVSGRGFIARDITFENTAGPAKHQAVALRSDSDLSVCFRCDIRGYQDTLYTHTMRQFYRECRISGTVDFLFGDGTVVFQKCLFLARKGLPNQKNTITAQGRKDPNQPSGFSIQFCNFTADSDLQVYLNSTATYLGRPWKPYSRTIIMQSYMSNAIRPEGWLEWNGSLHLSTLYYAEFSNYGPGAMAGSRVKWPGYHAFNQSAQAANYTVAQFIEGDLWLPSTGVKYTAGLGV | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3879095 | 3880080 | - | Bpe022656.1 | Bpe08g00556 | 107432 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe08g00556 | 299 | ProSitePatterns | Pectinesterase signature 1. | 11 | 30 | IPR018040 | - | |
| Bpe08g00556 | 299 | SUPERFAMILY | Pectin lyase-like | 2 | 296 | IPR011050 | - | |
| Bpe08g00556 | 299 | Gene3D | - | 1 | 297 | IPR012334 | - | |
| Bpe08g00556 | 299 | PANTHER | PECTINESTERASE | 1 | 297 | - | - | |
| Bpe08g00556 | 299 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED | 1 | 297 | - | - | |
| Bpe08g00556 | 299 | Pfam | Pectinesterase | 2 | 283 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe08g00556 | Bpe-Chr8:3879095 | Bpe03g00188 | Bpe-Chr3:2281330 | 8.75E-119 | dispersed | |
| Bpe05g00207 | Bpe-Chr5:13335516 | Bpe08g00556 | Bpe-Chr8:3879095 | 1.78E-123 | transposed | |
| Bpe02g02161 | Bpe-Chr2:22894363 | Bpe08g00556 | Bpe-Chr8:3879095 | 1.08E-108 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe08g00556 | K01051 | - | jre:108993586 | 529.25 |