Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00619 ATGAGGCTCTCTTCAGCTGGTTTTAGCCCTCAAAACCAAGAAGGTGAAATGAGGGTCCTGAATTCTGAGCTTTGGCATGCCTGCGCAGGGCCCCTTGTTTCGCTACCTGCAGTCGGGAGTCGCGTTGTATATTTTCCTCAGGGTCACAGCGAGCAGGTAGTGGTTACGACAAATAAAGAAGTCGACTCCCATATCCCTAACTATCCGACCTTGCCACCACAACTAATTTGTCAACTACACAATGTAACCATGCATGCTGATGTTGAAACAGATGAAGTGTATGCTCAAATGACATTGCAGCCTCTGAGCCCTCAAGAGCAAAAGGAAGCATATCTTCCGGCTGAGTTGGGCATCCCAAGCAAACAGCCAACAAACTATTTTTGCAAGACATTGACAGCCAGTGACACAAGTACTCATGGAGGGTTTTCAGTGCCTCGACGAGCCGCTGAGAAAGTGTTTCCTCCGTTGGACTTCTCCCAGCAGCCCCCAGCCCAGGAGTTGATTGCGAGAGATCTTCATGATAATGAATGGAAATTTAGACATATATTCCGCGGTCAGCCGAAAAGGCACCTCCTAACAACTGGATGGAGTGTGTTTGTGAGTGCTAAACGGCTTGTTGCTGGTGATTCCGTGCTCTTCATATGGAATGAGAAAAACCAGTTGCTACTTGGAATTCGTCGTGCTACTCGACCGCAGACAGTGATGCCTTCGTCAGTTTTATCAAGTGACAGCATGCACCTAGGCCTTCTTGCAGCTGCTGCGCATGCTGCTGCCACAAATAGCCGTTTCTCGATATTTTACAATCCGAGGGCTAGCCCATCTGAATTTGTGATACCCTGGGCAAAATATGTGAAAGCAGCCTATCATACTCGTGTGTCTGTTGGCATGCGGTTTAGAATGCTTTTTGAAACAGAAGAGTCAAGTGTCCGTCGCTACATGGGCACAATCACGGGCATTAGTGATCTAGATCCTGTTCGCTGGCGAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACGGCCGGAGAGAGACAACCAAGAGTGTCTCTATGGGAAATTGAGCCGTTAACAACATTCCCGATGTATCCATCTCCATTTCCACTTCGGCTCAAGCGACCATGGCCCACTGGACTTCCCTCTTTCCATGGGATTAAAGAGGATGAAGTGGGACTAAATTCTCCATTAATGTGGCTACGAGGAGATGCCGGGGATTGGGGAATTCAATCTTTGAACTTTCCCGGAGTTGGAGTGTCACCATGGATGCAGCCAAGACTTGATGCATCCATGCTTGGCTTGCAATCTGATATGTATCAAGCCATGGCTGCTGCTGCTCTGCAAGAAATGAGAGCTTCTGATCCATCCAAACTTCTTCAATTTCAGCAAACCCAGAGCCTTCCAGGCCGATCTCCTGCCCTGATTCAATCCCAGATGCTGCAAAATTCTCAACCTCAACAAGCTCTTCTTGAGTCCGTTCAACAAAACCCAAATCATACCCAATCCCAATCTCAAACTCGGTCGCACGTCCTTCAGCAGGAGATGCATCAACAGCAGCCGTTCAGTAATCAACATCAACAGCAACTGGTTGATCACCAAATTCCGAGCACTATTTCAACTATCTCTCAGTTTTCGACTACTTCTCAACCCTCGTCATCATCGATGCAGACACTCTCATCGCTATGCCCACAACAGAGCTTCTCCGATTCAAATGTTAACCCAGTGTCTAGCCCTGTTATTTTGCCATTGGACAGCCTCTTATGCTCATTTCCTTGCGATAAATCAACTCAGCTACCCAATCTGGCTAGACCCAACTTGTTGATACCTACCTCGTCATGGCCTTCAAAGCGAGCTGCACTTGATCCTCTTCTCTCAGGCACTCCTCAACATGTCATGCCCCATTTGGAACATTTGGGGGCACCTCAAGCTAATGTGACCCCAAATTCCATTTCGTTGCCACCATTTCCAGTTCGAGATTGCACAATTGACCAAGGAGGCACTGATCCTCAAGGCCGTCTTCTATTTGGTGTCAATATAGACCATTCCTCTTTTCTAATGCAAAATGGCATGTCAAGTCTCAGGGGAGTTGGCAGCGAGGGTGATTCATCTACTCTTCCCTTCCCTTCCAACTACATGAGCTCTGCCGCGACTGATTTCTCGGCTAACACTACTATGACACCTTCCAGTTGCATTGATGACTCGGGTTTCATGCAGCCCTCAGAAAATGTGGGCCAAGTAAACCCACCAATGAGAACCTTTGTTAAGGTTTACAAGTCAGGGTCCTTTGGTAGGTCACTGGATATTACTAAATTCAGCAGTTACCATGAGCTACGCAGTGAGCTTGCTCGAATGTTTGGGATTGAAGGCGAGCTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTCGGCGATGGGCCGTGGCCGGAGTTTGTGAATAGCGTGTGGTGCATAAAAATTCTGTCACCCCAAGAAGTGCAGGAGATGGGAAAACGAGGCCTGGAGCTTTTGAACTCAGTGCCGATTCAGAGGCTCTCCAACAGCAGTTGTGATAACTACACTGGTGGGCAGGATGCGAGAAACTTGGTCACGGGGATCGCTTCAGTCGGCTCAGTCAACTACTGA 2658 48.23 MRLSSAGFSPQNQEGEMRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVVTTNKEVDSHIPNYPTLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKEAYLPAELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFSIFYNPRASPSEFVIPWAKYVKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWRNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGIKEDEVGLNSPLMWLRGDAGDWGIQSLNFPGVGVSPWMQPRLDASMLGLQSDMYQAMAAAALQEMRASDPSKLLQFQQTQSLPGRSPALIQSQMLQNSQPQQALLESVQQNPNHTQSQSQTRSHVLQQEMHQQQPFSNQHQQQLVDHQIPSTISTISQFSTTSQPSSSSMQTLSSLCPQQSFSDSNVNPVSSPVILPLDSLLCSFPCDKSTQLPNLARPNLLIPTSSWPSKRAALDPLLSGTPQHVMPHLEHLGAPQANVTPNSISLPPFPVRDCTIDQGGTDPQGRLLFGVNIDHSSFLMQNGMSSLRGVGSEGDSSTLPFPSNYMSSAATDFSANTTMTPSSCIDDSGFMQPSENVGQVNPPMRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGIEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNSSCDNYTGGQDARNLVTGIASVGSVNY 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5031688 5036961 + Bpe022726.1 Bpe08g00619 107495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00619 885 PANTHER AUXIN RESPONSE FACTOR 6 1 864 - -
Bpe08g00619 885 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Bpe08g00619 885 Gene3D - 748 841 - -
Bpe08g00619 885 ProSiteProfiles PB1 domain profile. 752 836 IPR000270 GO:0005515
Bpe08g00619 885 SUPERFAMILY CAD & PB1 domains 743 827 - -
Bpe08g00619 885 MobiDBLite consensus disorder prediction 493 531 - -
Bpe08g00619 885 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bpe08g00619 885 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bpe08g00619 885 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 864 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe08g00619 885 Pfam AUX/IAA family 746 841 IPR033389 -
Bpe08g00619 885 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Bpe08g00619 885 Gene3D - 125 229 IPR015300 -
Bpe08g00619 885 CDD B3_DNA 126 227 IPR003340 GO:0003677
Bpe08g00619 885 SMART B3_2 127 229 IPR003340 GO:0003677
Bpe08g00619 885 Gene3D - 291 363 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00841 Bpe08g00619 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00237 Bpe-Chr4:1599492 Bpe08g00619 Bpe-Chr8:5031688 1.95E-35 dispersed
Bpe08g00619 Bpe-Chr8:5031688 Bpe11g01082 Bpe-Chr11:8124146 0 dispersed
Bpe09g00705 Bpe-Chr9:15634957 Bpe08g00619 Bpe-Chr8:5031688 3.76E-63 dispersed
Bpe13g00184 Bpe-Chr13:9759644 Bpe08g00619 Bpe-Chr8:5031688 7.55E-16 dispersed
Bpe08g00619 Bpe-Chr8:5031688 Bpe01g00841 Bpe-Chr1:15864973 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21753 PF02309 AUX_IAA 2.00E-07 CL0072 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00619 - - tcc:18596441 1380.54