Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00699 ATGTACAATAGTCAATTCGATGGCAATGCTGCATTTTCAGGGGGTGGCTTTATGCCCTCACAAGCCATCCAAGCTCCTGAAACCTCCTACTCTGCCACCAAAAATCGCGAAATCCAGGCCTTACTTCCACTAACTGTAAAGCAGATAAATGATGCATTTCTATCAAGTGATGATAAATCAAATTTCGTTATAGATGGAGTTGATGTAAACAATGTTAAACTTGTGGGGATGGTAGGCAATAGAGCTGGAAGAATCACTGATTTGACTTTTATACTTGATGATGGAACAGGACGAATCGACTGTAACAAATGGGTTAATGAAGCTGTTGAAACTAATGAAGTGGAGGGAATCAGGGATGGAATGTATGTCCGTATTCATGGACACTTGAAAAGTTTTCAAGGTAAAAGGACTTTGAATGTCTTCTCTATCAGGCCAGTCACTGATTTTAATGAGATTGCCAATCACTTCATCGAGTGTATGTACGTCCATCTCTACAATACCAGGGAAAAGCAAAAGAGTGGTGTGCCTAATCAGCCACAGAAGACAAGTTCAGCTTCTAATCCACCTATTATGGGGCACCACGCTGCTATGTCAAATCAATTCTTGGGCCAGTATAATGTTGGTGGACAGAAAAGTACTGAACAAATGATCTTAGAGTTTTTGCAGCTCCCTTCTTGCGACACGGACCGGGGTGCCCACCGAGATGTTATTGCTCGACAGCTTAATGTTCCAGTGGATAAGCTCATACATAGATGGACTGGTAGATACGAAGCTCATTTGTGGGATAACAGTTGCAGACGAGAAGGTCAGAGTAGAAAAGGAAGACAAGGTGGATATGATAAGGAAGATAAAGCAGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGTCCGACGACCACTACAAACTTTTCTGTCTGCAACTATGAGAAGGAGCTGGAGGAGATGAAGAACATGACCAGACAAGAATTTGTTGCTTCGCTTAGAAGGAAAAGTAGTGGGTTTTCTCGAGGAGCGTCCATTTATAGAGGAGTGACAAGGCATCATCAACACGGTAGGTGGCAAGCAAGGATTGGAAGGGTTGCAGGCAACAAAGATCTCTATCTGGGAACATTCGGTACTCAAGAAGAAGCTGCAGAAGCATATGACATTGCCGCCATAAAATTCAGAGGCCTCAATGCAGTGACCAACTTCGACATGAGCCGCTACGACATCAAAAGCATCGCCAGTACCAACCTTCCTATAGGAGGAGTTTCCGGGAAATCTAAAACCTCCTCCGATTCCGTCTCCGATAGCAAGAGTCTCGACGGAAACCGGTTGGACGACAGAGATCATTCGGCTTCCTCTTCATCAAACTTCCCGGCCCAACCTAATAACTCTGCATTAGCCTTCTCCATGCCTGTCAAGCAAGACCCATCAGATAATAATAATTACTGGCCAATGCTCAGCTTCCAAAACAGTTCATTCCTCAACTCTAGAAACCCTAACCCACCTTTTTCCATGGAGTTTTCTTCGGTTGATGAAGGCTACAGCATTCATCTGCAAAATGGGAGTCATTCTGATCAGATTTCAAGTCAGTTTTCAACACCCATTTGCTTAAATGCGGAGATGAACGCTTATGAAGATCATCCAGGCTATGGAAACCTGGTAGGGCAAACGATGTATTCTAAACCTAATTTTTTTCAGACGGCCATTTTTGGTGTAGAATGA 1713 43.67 MYNSQFDGNAAFSGGGFMPSQAIQAPETSYSATKNREIQALLPLTVKQINDAFLSSDDKSNFVIDGVDVNNVKLVGMVGNRAGRITDLTFILDDGTGRIDCNKWVNEAVETNEVEGIRDGMYVRIHGHLKSFQGKRTLNVFSIRPVTDFNEIANHFIECMYVHLYNTREKQKSGVPNQPQKTSSASNPPIMGHHAAMSNQFLGQYNVGGQKSTEQMILEFLQLPSCDTDRGAHRDVIARQLNVPVDKLIHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFSVCNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDIKSIASTNLPIGGVSGKSKTSSDSVSDSKSLDGNRLDDRDHSASSSSNFPAQPNNSALAFSMPVKQDPSDNNNYWPMLSFQNSSFLNSRNPNPPFSMEFSSVDEGYSIHLQNGSHSDQISSQFSTPICLNAEMNAYEDHPGYGNLVGQTMYSKPNFFQTAIFGVE 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8144067 8156337 - Bpe022817.1 Bpe08g00699 107575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00699 570 CDD RPA2_DBD_D 71 164 - -
Bpe08g00699 570 CDD AP2 250 305 IPR001471 GO:0003700|GO:0006355
Bpe08g00699 570 SUPERFAMILY DNA-binding domain 341 402 IPR016177 GO:0003677
Bpe08g00699 570 Gene3D - 33 168 IPR012340 -
Bpe08g00699 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 250 448 - -
Bpe08g00699 570 MobiDBLite consensus disorder prediction 171 189 - -
Bpe08g00699 570 MobiDBLite consensus disorder prediction 415 434 - -
Bpe08g00699 570 MobiDBLite consensus disorder prediction 415 461 - -
Bpe08g00699 570 CDD AP2 341 402 IPR001471 GO:0003700|GO:0006355
Bpe08g00699 570 ProSiteProfiles AP2/ERF domain profile. 232 306 IPR001471 GO:0003700|GO:0006355
Bpe08g00699 570 Pfam AP2 domain 342 392 IPR001471 GO:0003700|GO:0006355
Bpe08g00699 570 SUPERFAMILY DNA-binding domain 250 307 IPR016177 GO:0003677
Bpe08g00699 570 ProSiteProfiles AP2/ERF domain profile. 342 400 IPR001471 GO:0003700|GO:0006355
Bpe08g00699 570 SMART rav1_2 342 406 IPR001471 GO:0003700|GO:0006355
Bpe08g00699 570 SMART rav1_2 250 312 IPR001471 GO:0003700|GO:0006355
Bpe08g00699 570 MobiDBLite consensus disorder prediction 171 193 - -
Bpe08g00699 570 Pfam OB-fold nucleic acid binding domain 72 145 IPR004365 GO:0003676
Bpe08g00699 570 Pfam Replication protein A C terminal 163 247 IPR014892 -
Bpe08g00699 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 250 448 - -
Bpe08g00699 570 Gene3D AP2/ERF domain 245 308 IPR036955 GO:0003700|GO:0006355
Bpe08g00699 570 Gene3D AP2/ERF domain 342 402 IPR036955 GO:0003700|GO:0006355
Bpe08g00699 570 SUPERFAMILY Nucleic acid-binding proteins 41 168 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00030 Bpe-Chr4:260966 Bpe08g00699 Bpe-Chr8:8144067 1.03E-61 dispersed
Bpe08g00699 Bpe-Chr8:8144067 Bpe11g01266 Bpe-Chr11:9463537 2.34E-08 dispersed
Bpe14g00190 Bpe-Chr14:2219259 Bpe08g00699 Bpe-Chr8:8144067 4.42E-07 dispersed
Bpe08g00699 Bpe-Chr8:8144067 Bpe08g01222 Bpe-Chr8:13820585 2.82E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21763 PF08784 RPA_C 7.10E-06 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00699 K09285 - qsu:112025300 421.779