Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00796 ATGTTCTTGCTCTCTCTCATTTCGTCTCCTACTGACATACTATTTCGATTTAGCTTTCGTCTCGGTGGCCGTTCAGGGGAAGCCTATTACGATGCTGAGATTGAAGCTATGAAGGCCTCTGAATCCACCACCATGTTCATCGATTTCTCTCATCTCATCCGCTTCAATGATCTCCTTCACTTTGCTATCTCTGAAGAATACTTGAGGTTTGAACGCTACTTGAAGAATGCTTGCAAGCGGTTCGTGATGGAAAAGAAGCCCACCTTCATTGCTGATGACAACCTTGGCAAGGACATCAATGTTGCTTTTTTTAACATCCCCGTTTGTAAGAGGTTGAGGGAGTTGACTACAGCAGAAATTGGCAAATTAGTATCAGTGACAGGAGTTGTAACTCGTACAAGTGAGGTTCGACCAGAACTTCTCCAAGGGACCTTTAAGTGCCTTATATGTGGAGGTGTGATAAAGAACATTGAACAGCAATTCAAGTATACAGAGCCAACAATTTGCATGAGTCCTACATGTGCAAATAGAACGAAATGGGCATTACTGCGGCAAGAGAGCAAATTTTCTGATTGGCAAAGGGTGCGAATGCAAGAGACTTCCAAGGAGATACCAGCAGGATCTCTTCCTCGATCGTTAGATGTAATTCTTCGTCATGAGATGGTCGAGCGAGCCAGGGCCGGAGACACGGTTGTTTTTACGGGTACAGTGGTTGTGATACCAGACATACTTGCATTGGGCTCTCCTGGTGAAAGAGCAGAAACTCGACGAGAAGGTTCCCAACAGCAAAGTTCTACTGTTGGACATGAAGGAGTGAGAGGCCTTAAAGCTCTAGGAGTGAGAGACCTGTCATATCGATTAGCTTTTATCGCCAATTCAGTTCAAATTGCTGAAGGTAGGAGAGACACGGATGTCAGGAATAGGAAAAGGGAAAGTGATGAAGAACACCAGCAATTTACAGCGGAAGAGCTTGACGAAGTCCAAAGAATGAGGAATACACCAGATTTCTTAAATAAACTTGTTGAGAGTATTGCACCAACAGTCTTTGGTCACCAAGATATCAAGCGAGCTATCTTGCTTATGCTCCTAGGTGGAGTTCACAAGTATACTCATGAAGGCATCAATCTGAGAGGAGATATTAATGTTTGCATTGTAGGAGATCCAAGCTGTGCAAAATCTCAATTCCTGAAGTACACTGCAGGTATAGTTCCAAGATCTGTTTATACGTCTGGGAAATCCTCTTCAGCAGCAGGTTTGACTGCAACTGTGGCAAAAGAACCTGAAACTGGGGAATTTTGTATTGAGGCAAGAATTACTTGTAACTATTTTGCTGCCGGTGCTTTAATGCTTGCTGACAACGGGATTTGTTGCATTGATGAATTTGATAAAATGGATATTAGGGATCAGGTTGCAATTCATGAAGCGATGGAACAGCAAACTATAAGCATTACCAAAGCTGGAATACAAGCAACACTGAATGCTCGTACATCAATTCTGGCTGCTGCTAATCCTGCAGGCGGACGTTACGACAAGTCTAAGCCATTGAAGTATAATGTGGCTCTTCCTCCTGCCATTCTCTCAAGGTTTGACCTGGTATACGTTATGATTGATGATCCAGATGATCAAACAGATTACCACATTGCCCACCACATTGTCAGAGTACATCAGAAGCGTGAAAATGCTCTTTCTCCGGCATTTTCTACTGCAGAGCTGAAGAGATATATTGCATATGCAAAAACTTTAAAACCCAAGCTAAGCTCAGATGCGAGGAAATTGTTGGTCGACTCTTATGTTGCTTTACGTAGAGGAGATACCACTCCTGGCAGTAGAGTTGCGTATCGCATGACTGTTAGACAACTTGAGGCATTGATCAGACTATCTGAAGCCATTGCTCGAAGTTATTTGGAAACTCTGGTGCATACATGTTTTGACAAATTTCATTCACTAGTATTTGATATCTCATTATTTATGGAATATACTCAGAAAGACATGCACGCAGGTACAACCACATCACGTTCTGTGGAGTCGAGTGAGATTGATCTGTCAGAGTTTCAAGAAGAAAAAAATGTTGGTGACAATAATGGAGATAGGGTGGATGGTGATGCTAACCAAGATGATTCTCAACCAAGCAATGATCCAGTTTCAGGAAACGAAATTGGTTCTGCAGCTGCAAATCGAGAAGGAAGAAAACTTGTTCTAACGGATGAATATTTTCAGCGGATCACCCAAGCTCTCATTATGCACCTTAGGGAGCATGAAGAAACTGTAATGCAAGAAGGAACTGGGCTGGCGGGAATGAGACAGAGGGACTTGATTAAATGGTATGTGGATCAGCAGAATGCAAAAAATAAATATAGCACCGAGGTGGAGGTTATAAACGAAGTGTCTAACATTAAAGCTATTATAGAGAGTTTAATACGAAGGCAAGGGCATTTGATAGTGGTGGACGATGGCAGGCCAGTTACAGAGGGTGAAGTTGCTGGACAATCATCAAGTAGAAATGACAGAATTTTGGCTGTTGCTCCCAATTATGTCATTCATTGA 2544 42.49 MFLLSLISSPTDILFRFSFRLGGRSGEAYYDAEIEAMKASESTTMFIDFSHLIRFNDLLHFAISEEYLRFERYLKNACKRFVMEKKPTFIADDNLGKDINVAFFNIPVCKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLICGGVIKNIEQQFKYTEPTICMSPTCANRTKWALLRQESKFSDWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVVFTGTVVVIPDILALGSPGERAETRREGSQQQSSTVGHEGVRGLKALGVRDLSYRLAFIANSVQIAEGRRDTDVRNRKRESDEEHQQFTAEELDEVQRMRNTPDFLNKLVESIAPTVFGHQDIKRAILLMLLGGVHKYTHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEARITCNYFAAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKRENALSPAFSTAELKRYIAYAKTLKPKLSSDARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVHTCFDKFHSLVFDISLFMEYTQKDMHAGTTTSRSVESSEIDLSEFQEEKNVGDNNGDRVDGDANQDDSQPSNDPVSGNEIGSAAANREGRKLVLTDEYFQRITQALIMHLREHEETVMQEGTGLAGMRQRDLIKWYVDQQNAKNKYSTEVEVINEVSNIKAIIESLIRRQGHLIVVDDGRPVTEGEVAGQSSSRNDRILAVAPNYVIH 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9861506 9867931 + Bpe022916.1 Bpe08g00796 107672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00796 847 ProSiteProfiles MCM family domain profile. 336 551 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 MobiDBLite consensus disorder prediction 704 718 - -
Bpe08g00796 847 CDD MCM6 339 639 - -
Bpe08g00796 847 Gene3D - 314 642 IPR027417 -
Bpe08g00796 847 MobiDBLite consensus disorder prediction 666 721 - -
Bpe08g00796 847 Gene3D - 139 190 - -
Bpe08g00796 847 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 35 799 - -
Bpe08g00796 847 Pfam MCM AAA-lid domain 570 640 IPR041562 -
Bpe08g00796 847 Pfam MCM P-loop domain 324 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 MobiDBLite consensus disorder prediction 249 269 - -
Bpe08g00796 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 632 IPR027417 -
Bpe08g00796 847 Pfam MCM N-terminal domain 24 105 IPR027925 -
Bpe08g00796 847 Gene3D - 112 240 IPR012340 -
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein family signature 446 460 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein family signature 525 533 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein family signature 474 487 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein family signature 498 510 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein family signature 377 392 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 SUPERFAMILY Nucleic acid-binding proteins 25 242 IPR012340 -
Bpe08g00796 847 SMART mcm 108 656 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 Pfam MCM6 C-terminal winged-helix domain 730 846 IPR041024 -
Bpe08g00796 847 Pfam MCM OB domain 112 240 IPR033762 -
Bpe08g00796 847 Gene3D - 11 108 - -
Bpe08g00796 847 Gene3D - 727 847 - -
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 109 121 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 271 292 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 159 176 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bpe08g00796 847 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 212 223 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bpe08g00796 847 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 35 799 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bpe08g00796 847 ProSitePatterns MCM family signature. 454 462 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bpe08g00796 847 MobiDBLite consensus disorder prediction 679 703 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01592 Bpe-Chr4:22166731 Bpe08g00796 Bpe-Chr8:9861506 1.01E-78 dispersed
Bpe08g00796 Bpe-Chr8:9861506 Bpe10g00498 Bpe-Chr10:12199940 2.54E-110 dispersed
Bpe08g00796 Bpe-Chr8:9861506 Bpe15g00852 Bpe-Chr15:18514200 8.77E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00796 K02542 - jre:108993888 1274.23