Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00802 ATGAGGACCTCAGTCCTTAACCAGATACCTCACCTTTCACCCCCGAAAGATTCGCCACAGTACTCGGATTGGAGCTTCAAGTTAAAGGAGCAGGACTGTTTAAACCTGCTAAAGAAATGCAAGAACATGGAAGAATTGAAACAGATCCAAACACAAATCCTCAAGCTAGGACTGTTTTTAGATTCCTTCATCGCAAGCAATCTCATGGCTACTTGCGCGCTTTCCGATTGGGGGAGCATGGACTACGCCTGTTTGATTTTTCGACAAATGGACGAACCGACTAGCTTTGATTTCAACTCCGTGATTAGAGGACATGTGAAAGACATGAATTTCAACGACGCACTCTATCTGTATGAAGAAATGCTTGAAAGAGAGGTTGAGCCAGACAATTTCACATACCCAGGTCTTCTAAAGGCCTGCGCAAGATCCATGGCATCAGAAGAAGGAATGCAGCTTCACAATCATATAATTAAGCTTGGCCTTGAAGATGATCTGTTTGTTCAGAATAGTTTGATCAACATGTATGGAAAGTGCGGCGAAATTGAGCTATCTTGCTCTGTTTTTGAGCAAATTGGTCATAAGAGTGCTGCCTCTTGGAGTGCCATGATTGGAGCCCATGCAGGCCTAGGCTTGTGGAGGGAGTGTTTGGATTCGTTTGGGGAAATGAACAGCGAAGGAGGCTGTAGAGCAGAGGAAAGTATAATGGTTAGTGTTCTTTCTGCCTGCACACATTTGGGAGCCCTTGATTTAGGAAGGTGCGCGCATGGATTCTTGTTGAGGAACATCATTCAGCTGAATTTTATTGTAGAGACATCCTTAATCGACATGTATGTCAAATGTGGGGTGTTGGAGAAGGGGCTGTTTCTTTTCCAAAAGATGGGTAGGAAAAACCAGTTGTCTTATAGTGTTATGATCTCAGGCCTTGCTCTTCATGGCCATGGGAGAGAAGCTCTGAAGGTCTTTGAACAAATGCTCGAGGAAGACTTAGAACCGGATAGTGTCGTGTATGTGGGCATTTTGAGCGCTTGCAGTCGTGCCGGCCTAGTCAAGGAGGGTCTCCGACATTTTAATCGAATGAAATCCAAGCACGGGATTGAGCCGACGGTTCAACATTACGGTTGCATGGTGGATCTAATGGGCAGAGCCGGGAGGCTTAGAGAAGCCTTTGAGCTGATAGAGAACATGCCGATTCAACCAAACAATATCATATGGCGAAGCCTTCTTGGTGCTTGTAAAGTCCATAATGACTTAGAACTCGGCAAGATCTCGGCGAGAAACCTCTTTCTGTTGAACACGCATAATCCTGGAGATTACGTGGTTTTATCAAACATTTATGCTGGTGCGAAAAAGTGGGGTGATGCGGCTAAAGTTAGGATCGAAATGATTGACAAGGGTTTGATTCAGAGCCCAGGTTTTAGCTTGGTAGAGGTGAAAAGGAGAGTCTACAAATTCGTTTCACAAGACATGTCACATCCAAAGCATCGAGACATTTACGAGATGATTCACCAAATTGAGTGGCAGTTGAGATTCGAGGGGTATTCGCCCGACACGTCTCAGGTGATGCTCGATGGTAATGAAGACGAGAAGAGAGAAAGATTGAAAGGTCACAGCCAGAAGTTGGCAATTGCTTACGCTCTCATACGTTCATCCCAAGGCTCTCCAATAAGAATAGTAAGAAACCTCAGGATGTGTAGTGATTGCCATACTTACACTAAACTCATTTCAATGATCTATGAAAGACAAATTACTGTCCGAGATCGCAATTTCTTCCACCATTTTAAGGACGGAACTTGCTCGTGTAACAATTTTTGGTGA 1815 44.35 MRTSVLNQIPHLSPPKDSPQYSDWSFKLKEQDCLNLLKKCKNMEELKQIQTQILKLGLFLDSFIASNLMATCALSDWGSMDYACLIFRQMDEPTSFDFNSVIRGHVKDMNFNDALYLYEEMLEREVEPDNFTYPGLLKACARSMASEEGMQLHNHIIKLGLEDDLFVQNSLINMYGKCGEIELSCSVFEQIGHKSAASWSAMIGAHAGLGLWRECLDSFGEMNSEGGCRAEESIMVSVLSACTHLGALDLGRCAHGFLLRNIIQLNFIVETSLIDMYVKCGVLEKGLFLFQKMGRKNQLSYSVMISGLALHGHGREALKVFEQMLEEDLEPDSVVYVGILSACSRAGLVKEGLRHFNRMKSKHGIEPTVQHYGCMVDLMGRAGRLREAFELIENMPIQPNNIIWRSLLGACKVHNDLELGKISARNLFLLNTHNPGDYVVLSNIYAGAKKWGDAAKVRIEMIDKGLIQSPGFSLVEVKRRVYKFVSQDMSHPKHRDIYEMIHQIEWQLRFEGYSPDTSQVMLDGNEDEKRERLKGHSQKLAIAYALIRSSQGSPIRIVRNLRMCSDCHTYTKLISMIYERQITVRDRNFFHHFKDGTCSCNNFW 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9976623 9978437 + Bpe022922.1 Bpe08g00802 107678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00802 604 TIGRFAM PPR: pentatricopeptide repeat domain 98 129 IPR002885 -
Bpe08g00802 604 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Bpe08g00802 604 TIGRFAM PPR: pentatricopeptide repeat domain 334 368 IPR002885 -
Bpe08g00802 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Bpe08g00802 604 Pfam E motif 414 476 IPR046848 -
Bpe08g00802 604 PANTHER - 19 590 - -
Bpe08g00802 604 Pfam PPR repeat 198 226 IPR002885 -
Bpe08g00802 604 Pfam PPR repeat 169 190 IPR002885 -
Bpe08g00802 604 Pfam PPR repeat 271 296 IPR002885 -
Bpe08g00802 604 Gene3D Tetratricopeptide repeat domain 141 250 IPR011990 GO:0005515
Bpe08g00802 604 Gene3D Tetratricopeptide repeat domain 30 140 IPR011990 GO:0005515
Bpe08g00802 604 Gene3D Tetratricopeptide repeat domain 263 496 IPR011990 GO:0005515
Bpe08g00802 604 Pfam PPR repeat 364 395 IPR002885 -
Bpe08g00802 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 590 - -
Bpe08g00802 604 Pfam PPR repeat family 95 142 IPR002885 -
Bpe08g00802 604 Pfam PPR repeat family 297 344 IPR002885 -
Bpe08g00802 604 Pfam DYW family of nucleic acid deaminases 512 604 IPR032867 GO:0008270
Bpe08g00802 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Bpe08g00802 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 367 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00802 - - - qsu:112025232 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00802 Bpe-Chr8:9976623 Bpe14g00577 Bpe-Chr14:4887249 2.12E-170 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00802 Bpe_Chr08 FPKM 1.95308 2.245316 3.508423 3.699689 2.934802 3.690319 3.623622 2.878423 2.288276 2.006899