Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00806 ATGCATTTATCTAAAGAGGCCATTAGTGGGTTAGAATTTCTGAAGAGAAAAAGACTTCAGAGAATGCAAACGCAAACTGCCTCAGAAAATGTATCTGTCACCAATTTGATGGCCAGAAGTGGGGGAGATGCTTTGAGGGTTTCAACTTCATTTGGATTAAGATTAATTGGTAATGCAGATTCCTTTTCTCAATCAAGTAGTTCATTGAATGCAAAGGATCTTTTTTCAAAACGCAAAGTGGAGAAATTTAGCACTAGCGACATAGAATGGATTGAGAAGATTCCAGAATGCCCTGTATATTGTCCTTCAAAAGAGGAGTTTGAAGATCCTTTGGTTTATTTGCAAAAGATTGCTCCACAAGCCTCTCAATATGGTGTATGCAAAATTGTCTCCCCATTAAGTGCGTCTGTTCCAGCTGGTGTTGTGTTAATGAAGGAAAAAGCTGGGTTTAAGTTTACTACGAGAGTGCAACCTCTTCGCCTTGCTGAGTGGGATACGGAGGACAGAATCACATTTTTCATGAGTGGAAGAAATTATACATTTCGTGATTTCGAAAAAATGGCGAACAAGAGTTTTGCTCAAAGATACTGTAGTTCTGGTTGTCTCCCTTCCGCATATTTGGAGAAGGAGTTTTGGACAGAAATTACTTGTGGAAAGACAGAAACAGTTGAATACGCATGTGATGTAGATGGTAGCGCCTTTTCATCTTCTCCAAATGATGAGCTTGGAAGCAGCAAATGGAATTTGAAGAAACTTTCACGCTTACCGAAGTCCATTTTGCGCTTGTTAGAAACAGCTATTCCGGGAGTGACTGATCCCATGCTTTACATTGGTATGCTTTTTAGTATATTTGCTTGGCACGTGGAGGACCATTATTTGTACAGTATTAATTATCATCACTGTGGAGCATCAAAAACGTGGTATGGCATACCTGGTCATGCTGCTTTGGAGTTTGAAAAGGTGGTGAGAGAGCACGTATACACACATGATATAATGTCAACCAATGGAGAAAATGGAGCTTTCGATGTCCTCCTGGGGAAAACAACCCTATTTCCTCCAAATATTCTGTTGGAACATGATGTCCCTGTCTACAAGGCTGTGCAAAACCCTGGGGAGTTCATAATTACCTTTCCTAGAGCATACCATGCAGGATTTAGTCATGGCTTTAATTGTGGTGAGGCTGTGAACTTTGCGATTAACGATTGGTTCCCATTGGGGGCTGTAGCTAGCCAACGGTATGCAGTCCTTAATAGGATGCCTCTACTACCTCATGAAGAACTTCTGTGTAAAGAAGCACTACTTTTGCACAAGAGTTTTGCACTTGAAGATTTGGATAATTCATCTTCGGATTTTGTATCTCATAATTCCGTCAAGGCTTCTTTTGCCAGTCTAGTACGCTTCCAGCATTGTGCTCGATGGTTACTGATGAAGTCGAAGGCATGCACTGGTGTTGCTATAAATTGTCATGGGACCATCCTCTGTAGTTTATGCAAACGTGATTGTTACATAGCTTATGTTAACTGCAGCTGTTATGGACATCCAGTGTGCCTTCGCCATGATATTCAGTCTCTAGACTTCCCTTGTGGTGGCAAGCATACTCTCTATTTGCGGGAGGATGTTTCTGAAATGGAACAGGCAGCGCAGAAGTTTGAACAGGAAGTAGGGATACAGGACGAGATTTGTGGACAAGCTGGAGGGGATAATGACTTGTATTCATATCCGCATGAAAATTTGTTTCAAAAGGCTGAAGAGGGTGGATACGAGCCTTATTGTGATATAACAGTTGAGTTTAATCCTGAAACCACCGACCTTGATAGGTTTCAACTGTTAGAGCAAGAGAGGATCTCTTACAGTCAACCTATGTCTAGTGATATAACTGAAGAGATCAAATCTGGAATGTCCAAATCATCTGTTACCCAAGGGTCGTTGTCTTTTTCTTCATTTCTCGAGCCTTTGGATTCTGCTTTTGCACAAAACCATGTGCAGAGGACTGCCAAGTTTTACTCAGGAAATCTTGATTCTGGAAGCTTTTCTCAAGAAGCTCCTAGTGCATATGAATCTTCACCATCTCTCCCAGTCTGTGAGAATTGCACCAAGACTTGTGCAGAAAATACTTGTAAATCAGAAACACAGCCCCTTGTTAATGAAGATAGTGATAGTTCTGATGAGATATTTCGGGTTAAGCGCCGAACGTTAAAGTCAGAAAAGAAAAATATGAATGAGACTTCTTCTAAGCATTCCGAACACCAGGGCCTTAAAAGATTGAAAAAGTTCCAACCTCATATAAGAAGCAGGCAACTGATTTCATCAGATTACAGCCGAACAGGTGAATCGAGTTCCAAACATTGGTCTGCAACCTGCGAAGGAACTGCAGAGAATGTTTTGAATGATAGGTCTGCTAGAGGAAGTACCATTCCTGTCTCTATCAAGTTTAAGAGATTACCCAATGAGGAGGCCACAAGTCAAAGACTGCATGAAAATCATGGAAAATATCGGCATGAACATATGGCTAAGCCGTTGAGAGAACAGCTCTGGAAGGGTAATGAGATTGAGCCGAAGCGCCTCAAGGTAAGAGGTCCATCTCTTCTTGGGTTCGAAGGAGGTCGAAGTTGA 2613 41.52 MHLSKEAISGLEFLKRKRLQRMQTQTASENVSVTNLMARSGGDALRVSTSFGLRLIGNADSFSQSSSSLNAKDLFSKRKVEKFSTSDIEWIEKIPECPVYCPSKEEFEDPLVYLQKIAPQASQYGVCKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDRITFFMSGRNYTFRDFEKMANKSFAQRYCSSGCLPSAYLEKEFWTEITCGKTETVEYACDVDGSAFSSSPNDELGSSKWNLKKLSRLPKSILRLLETAIPGVTDPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFEKVVREHVYTHDIMSTNGENGAFDVLLGKTTLFPPNILLEHDVPVYKAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFAINDWFPLGAVASQRYAVLNRMPLLPHEELLCKEALLLHKSFALEDLDNSSSDFVSHNSVKASFASLVRFQHCARWLLMKSKACTGVAINCHGTILCSLCKRDCYIAYVNCSCYGHPVCLRHDIQSLDFPCGGKHTLYLREDVSEMEQAAQKFEQEVGIQDEICGQAGGDNDLYSYPHENLFQKAEEGGYEPYCDITVEFNPETTDLDRFQLLEQERISYSQPMSSDITEEIKSGMSKSSVTQGSLSFSSFLEPLDSAFAQNHVQRTAKFYSGNLDSGSFSQEAPSAYESSPSLPVCENCTKTCAENTCKSETQPLVNEDSDSSDEIFRVKRRTLKSEKKNMNETSSKHSEHQGLKRLKKFQPHIRSRQLISSDYSRTGESSSKHWSATCEGTAENVLNDRSARGSTIPVSIKFKRLPNEEATSQRLHENHGKYRHEHMAKPLREQLWKGNEIEPKRLKVRGPSLLGFEGGRS 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10063978 10070040 - Bpe022926.1 Bpe08g00806 107682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00806 870 SMART cupin_9 241 414 IPR003347 -
Bpe08g00806 870 Gene3D Cupin 97 458 - -
Bpe08g00806 870 ProSiteProfiles JmjN domain profile. 97 138 IPR003349 -
Bpe08g00806 870 MobiDBLite consensus disorder prediction 733 752 - -
Bpe08g00806 870 Pfam jmjN domain 98 130 IPR003349 -
Bpe08g00806 870 Pfam JmjC domain, hydroxylase 274 397 IPR003347 -
Bpe08g00806 870 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 25 865 - -
Bpe08g00806 870 PANTHER LYSINE-SPECIFIC DEMETHYLASE 25 865 - -
Bpe08g00806 870 SMART JmjN_1 96 137 IPR003349 -
Bpe08g00806 870 ProSiteProfiles JmjC domain profile. 244 414 IPR003347 -
Bpe08g00806 870 SUPERFAMILY Clavaminate synthase-like 175 431 - -
Bpe08g00806 870 Pfam C5HC2 zinc finger 494 545 IPR004198 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00806 - - - vvi:100266131 1128.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01049 Bpe-Chr2:11713484 Bpe08g00806 Bpe-Chr8:10063978 7.80E-56 dispersed
Bpe08g00806 Bpe-Chr8:10063978 Bpe09g00662 Bpe-Chr9:15252648 1.22E-62 dispersed
Bpe11g00318 Bpe-Chr11:2337577 Bpe08g00806 Bpe-Chr8:10063978 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21771 PF02373 JmjC 6.50E-40 CL0029 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00806 Bpe_Chr08 FPKM 20.592833 20.922888 16.325785 16.341995 33.270199 31.43643 31.279909 16.334446 14.457948 15.216283