Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00826 ATGGAAACTGCGCTCTCGAAAACTGTGTGTGTGATGGACGCCTCAGGAACACTGGGTTCGAGCCTTGTTAAACGTCTTCTCCAGAGGGGTTATTTTGTTCATGCTGCTGTTCAAAGCCATGGGGAATTTCTGTTTAGAGAGTGTGATGAAAAGCAGCTGAAGGTTTTCCATTCGGATCCCTTCGACTACCAGAGCATAATCGATGCATTGAGAGGCTGTTCTGGCATGTTTTATGCGTTTGAACCTCCGCAAGATTATCCGACCTACGATGAATTCATGGCAGAGGTGGAAGTGAGAGCAGCTCACAACGTAATTGAAGCATGTGCTCAAACCGAAACCATAGACAAGGTCGTTTTCACGTCTTCTGTCACTGCCGTCATTTGGAGGGACGATCGCAATTCCATGGCATCAGACTTCGATGAACGGTTGTGGAGTGATGTCAGTTTTTGCCGGAAATTCAAGTTATGGCATGGGCTATCAAAGACATTAGCAGAGAAGAGTGCATGGACATTGGCCATGGACAGGGGAGTAAACCTGGTGTCCATCAATGGAGGATTACTCAAAACCCCTGATCTCACCATAGAAAACCCGTATCTAAAAGGGGCGGCCGAGATGTACGAAGACGGCTTATTTGTCACCATGGATCTAAATTTTGTGGTTGACGCTCACATCTGTGTTTTTCAAGACATCTCTTCGTACGGCCGATATCTATGCTTCGACCACATCATCAACCGAAATGAAGACGCGATTGAGCTTGCTCGGAAGTTAACGCCATCGGCCCCTTTACCGCCAAGGTTAGAAGATATGAGGATCATTCAACAAAGAATAAGCAATAAGAAACTCAATAAGTTAATGGTCAATTTTGAGGCTGTACCTCAACTGCAGTGA 888 45.83 METALSKTVCVMDASGTLGSSLVKRLLQRGYFVHAAVQSHGEFLFRECDEKQLKVFHSDPFDYQSIIDALRGCSGMFYAFEPPQDYPTYDEFMAEVEVRAAHNVIEACAQTETIDKVVFTSSVTAVIWRDDRNSMASDFDERLWSDVSFCRKFKLWHGLSKTLAEKSAWTLAMDRGVNLVSINGGLLKTPDLTIENPYLKGAAEMYEDGLFVTMDLNFVVDAHICVFQDISSYGRYLCFDHIINRNEDAIELARKLTPSAPLPPRLEDMRIIQQRISNKKLNKLMVNFEAVPQLQ 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10371365 10373498 + Bpe022948.1 Bpe08g00826 107702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00826 295 CDD FR_SDR_e 9 286 - -
Bpe08g00826 295 Gene3D - 1 294 - -
Bpe08g00826 295 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 6 292 - -
Bpe08g00826 295 Pfam NAD(P)H-binding 14 126 IPR016040 -
Bpe08g00826 295 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 277 IPR036291 -
Bpe08g00826 295 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 6 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00826 - - - pop:7491865 447.973
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g00826 Bpe11g00327 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00826 Bpe-Chr8:10371365 Bpe09g00497 Bpe-Chr9:13573015 5.15E-54 dispersed
Bpe03g00963 Bpe-Chr3:29191654 Bpe08g00826 Bpe-Chr8:10371365 7.23E-139 transposed
Bpe11g00327 Bpe-Chr11:2394483 Bpe08g00826 Bpe-Chr8:10371365 1.65E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g685 . . . . . . Bma07g00925 Bma14g00160 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0472 . . . . . . Blo03g00870 Blo19g00196 . Bda09g00737 Bpe08g00826 Bpe11g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002312 4 3 3 3 3 2 2 2 2 1 2 2 2 1 1 1 2 3 2 2 1 2 1 2 2 2 2 1 3 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00826 Bpe_Chr08 FPKM 77.414612 88.430801 61.794422 59.615982 45.219471 41.016579 46.099907 37.286526 34.983719 34.551311