Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00863 ATGGATTCTGAAGAAAGTAACCTCTTCGAAACGGCTTCTCAGCCTGACACGGGCAACGATGCGTACACTTTTCTGGAATTCAATTCACAGGGCGAAGATTTCGACTTTGACGAATTTCGTGATCCGATCAGATCTTCTGTTGCGTGGCCGACGCCATCCGATTCATTGGCTGATGCCGCCGACCGTGGCGGTGGTCCTGGTTCGGATTACCAGTCTGATGCATCGCCGGTTTCTGCTCCTTCGGGAAGTGCCGCCAAGGGTCGGAATGGCGGGTTGGGTAGCAGTAGTGGGAACAATCAGGTTGTTGACGCTTTGGCTGCTGGGATGGGTGGGTTGAATTTTGATGATACTGGGGAGGATGATAATTACGGGTTTGGTAAAGGGAATTTCACAGAACACGCGTGCCGGTACTGTGGTGTTTCAAACCCAGCTTGCGTCGTCAGGTGCAATGTGCCGTCATGCCGTAAATGGTTTTGTAATTCAAGAGGAAACACTTCCGGGTCCCACATCGTAAATCATCTAGTTCGAGCAAAGCATAAGGAAGTTTGTCTTCATAAAGATAGTTCTTTGGGGGAGACGATCCTTGAATGCTACAACTGTGGATGTCGAAATGTGTTCCTTCTTGGATTTATTTCTGCCAAGACAGAAAGTGTGGTTGTTCTTCTTTGTAGAGAACCTTGCTTAAACGTTAATGCATTAAAGGATATGAATTGGGACCTGAGTCAGTGGTGCCCTCTGATTGATGATCGTTGTTTTTTGCAATGGTTGGTAAAGGTTCCATCTGAACAAGAGCAATTAAGGGCCCGGCAGATTAGTGCTCAGCAAATTAATAAGGTGGAAGAGCTTTGGAAGATAAATCCCGATGCTACCCTGGAAGACCTTGAAAAGCCTGGCGTAGATGATGAGCCTCAACCAGTAGCACTGAAATACGAAGATGCATATCAGTATCAAAATGTTTTTGCACCTCTTATCAAGCTTGAAGCTGATTATGATAAAATGATGAAAGAATCACAGAGCAAAGACAATATTACTCTTCGGTGGGATATCGGTCTTAACAAGAAGCGAATAGCATACTTTGTCTTTCCAAAGGAGGACAATGAGTTGCGGCTTGTGCCCGGAGATGAGTTGCGGTTACGTTATTCTGGTGATGCGGCCCATCCAGCATGGCAGTCAGTGGGGCATGTTATTAAGCTAACTGCTCAGGAGGAGGTTGCACTGGAACTTCGAGCAAGTCAGGGAGTCCCAGTTGATATAAACCATGGATTTAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTTGATCGAATGCAAGGAGCAATGAAAACTTTTGCAGTGGACGAGACCAGTGTTAGTGGTTACATCTATCACCATTTGTTGGGTCATGAAGTAGAGGTGCAAATGGTACGCAATACGCTGCCTCGTCGCTTTGGCGCACCTGGGCTACCAGAACTCAATGCCTCGCAAGTTTTTGCTGTAAAGAGTGTCCTTCAGAAGCCTATAAGTTTGATTCAAGGTCCACCTGGCACAGGAAAAACAGTGACCTCTGCAGCCATTGTTTATCACATGGCTAAACAAGGCCAGGGGCAGGTTTTAGTTTGTGCGCCTAGTAATGTTGCAGTGGACCAACTTGCTGAAAAGATCAGTGCGACTGGATTAAAAGTGGTTAGAATATGTGCAAAATCAAGGGAAGCTGTAAGCTCACCAGTTGAGCATCTGACCTTACATTATCAGGTTCGACATTTGGACACATCTGAAAAGAGAGAATTGTCCAGTAGTGATGAGAAGAAATACAAAGCGCTAAAACGAGCTACAGAGAGGGATATATCTCAAAGTGCTGATGTCATTTGTTGCACCTGTGTTGGTGCAGGAGATCCTCGACTATCGAACTTTAGATTTCGCCAGGTACTTATTGATGAATCTACTCAAGCAACGGAGCCTGAGTGTCTTATTCCACTAGTTCTTGGAGTAAAGCAGGTTGTTCTTGTTGGTGATCATTGCCAGCTTGGTCCTGTCATTATGTGTAAGAAAGCAGCTCGAGCTGGGCTAGCACAGTCACTCTTTGAGCGCCTTGTTCTTCTTGGTGTTAAGCCCATCAGGTTGCAGGTTCAATACCGTATGCATCCATCTCTGTCGGAGTTTCCCTCTAATAGCTTTTATGAAGGTACTCTCCAAAATGGAGTGACCATCAATGAAAGGCAAACAACAGGCATTGATTTCCCTTGGCCTGTGCCTAATCGTCCCATGTTCTTTTATGTCCAGATGGGGCAAGAAGAGATAAGCGCCAGTGGAACATCATACTTAAATAGAACGGAGGCAGCAAATGTTGAGAAAATCGTTACTACCTTCTTAAGGAGTGGTGTGGTTCCCAGCCAGATTGGTGTAATTACCCCATATGAGGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAACGGTGCTCTCAGGCAGCAGCTTTACAAGGAAATTGAGGTTGCTAGTGTGGACTCCTTTCAAGGAAGGGAGAAGGATTACATCATTCTTTCATGTGTGAGGAGTAATGAACATCAGGGCATTGGATTCCTTAATGACCCTCGTCGGCTTAATGTTGCATTGACACGCGCAAGATATGGTATTGTCATTCTTGGAAACCCAAAAGTTTTGAGCAAACAGCCCCTTTGGAATGGTTTATTGACACATTATAAGGAACATGAATGCTTGGTCGAAGGGCCTCTGACTAATTTGAAACAGAGTATGATTCAGTTCCAAAAACCCAAAAAGATCTACAATGATCGACGCCTGGTCTTTGGTGGAGGATCTGGGTTGGCATCTGATGACACTTTCAGTACTAGTTCTGGATCTGGTATAAATTCTGATCGACGTAGCAACCGCAGTCGGGGCACCTACATGACACCTGGCCCACCTAATGGTTCTCACAAGCCTGTCACACAACCTACTGGGTATCCTATGCCTCGGATTCCCCTTCCTCCATTTCATAGTGGTGCTTCGCAGCCATATGCTATTCCAAGTCGTGGAGCAGTGCATGGACCAATTGGTGCTGGTCCTCATGTGCCTCCTCCAGCAAGTAGTGGTTTTGGTGCTGGTCGTGGAAGCACAGGGAGTCCTATTGGTAGTCATCTCCAACACCAGCAAAGCCCACAACAATCAATAGGAAATATTGGCTCTTCTTTCAACTTCCCTACCTTAGAGAATCCAAACAGCCATCCATGTGTGGTTGGTCAATTATCTCAACCTGGATTTTTGCCAGTTCAAGGGCCGAGCCAAACTTTTCGTGATGGATTTTCCATGGGAGGCTTGCCACAAGACTTTTTGGGTGACGATTTCAAAAGTCGTGGATCGCATATTCCTTACAATGTCACTGACTTTTCCACTCAAACCTCTCCAAGTGCATACAATTTTGATTACAATCAAGGTCCACAAACTGGGTTTCCAGGGAGCGTTCTTAACCAAAACTCTCAAGCGGGATATTCTCGTTTAGGAGGTGGGAGTGAGTTTATGCCTCAGGACTACATTGCTCATGGACCACAAGGTCTATTCAGTCAGGTGGGCTTTAATGATCTTACTCCAGAAGATGCCTCACAAAATAAGTATGGCGGACCCAACACCAACCCCCTTCATTCTCAGGGTTTGATGAATTCTCTATACTCTCAACCCTTCACCCACTACAACACTCCTCCACTGAACCTACCTGCCACTCAACAGCAGCCTTCACCATCTCAGGGCTCCCAAAATCAGAAGGTTCACTACAACGGTTGA 3756 45.69 MDSEESNLFETASQPDTGNDAYTFLEFNSQGEDFDFDEFRDPIRSSVAWPTPSDSLADAADRGGGPGSDYQSDASPVSAPSGSAAKGRNGGLGSSSGNNQVVDALAAGMGGLNFDDTGEDDNYGFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSSLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKINPDATLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITLRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRICAKSREAVSSPVEHLTLHYQVRHLDTSEKRELSSSDEKKYKALKRATERDISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLTNLKQSMIQFQKPKKIYNDRRLVFGGGSGLASDDTFSTSSGSGINSDRRSNRSRGTYMTPGPPNGSHKPVTQPTGYPMPRIPLPPFHSGASQPYAIPSRGAVHGPIGAGPHVPPPASSGFGAGRGSTGSPIGSHLQHQQSPQQSIGNIGSSFNFPTLENPNSHPCVVGQLSQPGFLPVQGPSQTFRDGFSMGGLPQDFLGDDFKSRGSHIPYNVTDFSTQTSPSAYNFDYNQGPQTGFPGSVLNQNSQAGYSRLGGGSEFMPQDYIAHGPQGLFSQVGFNDLTPEDASQNKYGGPNTNPLHSQGLMNSLYSQPFTHYNTPPLNLPATQQQPSPSQGSQNQKVHYNG 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10981753 10991798 + Bpe022986.1 Bpe08g00863 107739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00863 1251 MobiDBLite consensus disorder prediction 1034 1048 - -
Bpe08g00863 1251 MobiDBLite consensus disorder prediction 44 97 - -
Bpe08g00863 1251 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 618 IPR014001 -
Bpe08g00863 1251 Pfam Type III restriction enzyme, res subunit 487 556 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bpe08g00863 1251 Pfam AAA domain 586 673 IPR041677 GO:0004386
Bpe08g00863 1251 Gene3D - 339 427 - -
Bpe08g00863 1251 PANTHER DNA2/NAM7 HELICASE FAMILY 109 1000 IPR045055 -
Bpe08g00863 1251 Pfam RNA helicase UPF1, 1B domain 338 427 IPR040812 -
Bpe08g00863 1251 CDD ZBD_UPF1-like 134 256 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bpe08g00863 1251 Gene3D - 569 608 - -
Bpe08g00863 1251 MobiDBLite consensus disorder prediction 1184 1251 - -
Bpe08g00863 1251 MobiDBLite consensus disorder prediction 939 965 - -
Bpe08g00863 1251 CDD SF1_C_Upf1 706 895 IPR041679 -
Bpe08g00863 1251 Pfam RNA helicase (UPF2 interacting domain) 133 286 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bpe08g00863 1251 MobiDBLite consensus disorder prediction 1 26 - -
Bpe08g00863 1251 Gene3D - 705 916 IPR027417 -
Bpe08g00863 1251 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 109 1000 - -
Bpe08g00863 1251 CDD DEXXQc_UPF1 483 705 - -
Bpe08g00863 1251 Gene3D - 447 704 IPR027417 -
Bpe08g00863 1251 MobiDBLite consensus disorder prediction 939 1048 - -
Bpe08g00863 1251 CDD 1B_UPF1-like 339 426 IPR040812 -
Bpe08g00863 1251 Pfam AAA domain 683 878 IPR041679 -
Bpe08g00863 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 899 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00863 K14326 UPF1, RENT1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] - qlo:115972376 2207.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g00863 Bpe11g00354 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01126 Bpe-Chr3:30320188 Bpe08g00863 Bpe-Chr8:10981753 6.72E-47 dispersed
Bpe04g00455 Bpe-Chr4:2914149 Bpe08g00863 Bpe-Chr8:10981753 2.15E-43 dispersed
Bpe08g00863 Bpe-Chr8:10981753 Bpe12g00744 Bpe-Chr12:12968147 1.49E-48 dispersed
Bpe04g00822 Bpe-Chr4:5421444 Bpe08g00863 Bpe-Chr8:10981753 3.65E-49 transposed
Bpe11g00354 Bpe-Chr11:2564767 Bpe08g00863 Bpe-Chr8:10981753 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00863 Bpe_Chr08 FPKM 43.307343 52.379669 31.197639 33.936676 18.906397 15.322828 16.262074 32.110771 31.506203 29.949127