Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00867 ATGCATGAACCATGCTATGGAATGATCGCCGCCGCAGCAGGTTGCGGTTCTGGTTTGAGCGGCGATTTATCAGTCTCCGGCGACCACCGTCACCGGCAAATCAAGGCTGAGATAGCCGGTCATCCAATATACGAGCAGCTTCTCGCCGCCCACGTGGCCTGTCTTCGGGTAGCTACCCCTATTGATCAGTTGCCGCTCATAGACGCGCAGTTGGCGCAATCAGAACACCTTTTACGCTTTTATTCGGCGAACTCGCAGCATCACCAATGCCATTCTCTATACCCCCATGAGCGCCAAGAGCTTGACAACTGCTTGGCACAGTATCTGTTAGTTCTGTGTTCTTTTAAAGAACAGCTTCAACAACATATTAGAGTTCATGCTGTTGAAGCTGTCATGGCCTGCCGGGAAATTGAAAACACTTTACAAGCTCTCACTGGAGCTAGTCTTGGAGAAGGTACAGGAGCAACAATGTCAGATGAGGAAGAAGATGTGCAGATGGACTTCTCGTTGGACCCATCTGGTGCAGATGGCCATGACATGATGGGCTTTGGCCCGCTTCTTCCTACTGAATCTGAAAGATCTTTAATGGAGAGGGTTCGCCAAGAACTCAAGATTGAGTTGAAGCAGTTAAACTTTCATCTGTCGTTGTTGCAGGGTTTTAAGTCTAGAATTGAAGATGTTAGAGAAGAAATACTAAGGAAAAGAAGGGCTGGAAAATTACCCGGTGATACAACTACTGTGCTAAAAACTTGGTGGCAACAGCATTCTAAGTGGCCTTACCCAACTGAAGATGATAAGGCAAAGCTAGTGGAGGAGACAGGATTGCAGTTGAAACAAATAAACAACTGGTTCATCAACCAAAGAAAGAGAAATTGGCATAGCAGTTCTCAATCTGTGACATCCTTAAAGTCCAAGCGCAAGAGATAA 927 46.49 MHEPCYGMIAAAAGCGSGLSGDLSVSGDHRHRQIKAEIAGHPIYEQLLAAHVACLRVATPIDQLPLIDAQLAQSEHLLRFYSANSQHHQCHSLYPHERQELDNCLAQYLLVLCSFKEQLQQHIRVHAVEAVMACREIENTLQALTGASLGEGTGATMSDEEEDVQMDFSLDPSGADGHDMMGFGPLLPTESERSLMERVRQELKIELKQLNFHLSLLQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSSSQSVTSLKSKRKR 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11044130 11047481 - Bpe022990.1 Bpe08g00867 107743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00867 308 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Bpe08g00867 308 SMART HOX_1 233 298 IPR001356 GO:0003677
Bpe08g00867 308 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 3 308 - -
Bpe08g00867 308 Gene3D - 230 304 - -
Bpe08g00867 308 CDD homeodomain 234 295 IPR001356 GO:0003677
Bpe08g00867 308 Pfam KNOX1 domain 33 75 IPR005540 GO:0003677|GO:0005634
Bpe08g00867 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 308 - -
Bpe08g00867 308 SMART KNOX2_2 91 146 IPR005541 GO:0003677|GO:0005634
Bpe08g00867 308 SUPERFAMILY Homeodomain-like 233 297 IPR009057 -
Bpe08g00867 308 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Bpe08g00867 308 Pfam KNOX2 domain 95 145 IPR005541 GO:0003677|GO:0005634
Bpe08g00867 308 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00548 Bpe-Chr2:3559863 Bpe08g00867 Bpe-Chr8:11044130 7.20E-135 dispersed
Bpe08g00867 Bpe-Chr8:11044130 Bpe11g00693 Bpe-Chr11:5336908 0 dispersed
Bpe08g00867 Bpe-Chr8:11044130 Bpe08g01469 Bpe-Chr8:15405169 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21781 PF03791 KNOX2 7.00E-16 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00867 - - csv:101206054 501.13