Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00870 ATGGGTACAAGACCCCAGAATCCATTACGAGAAGATGATGATGACGACCTTTATAGCGGTCGTGCTGCCACAATTTCAGGCCAATCTGTGTCCATGAGTGGCAGCATCGGATCCCCTTCCAGCCGAAGTGAGCAAACGATGACTACCCCAGCCAGTGACAATACTTTCCTTCGATTAAACCACCTTGATATTCATGGAGACGATGTCGGATCGCAAGGCGCTATTTCTAACAAGAAGAAAAAGAGAGGTCAGCGTGCTGTTGGAGGCGATAAGAGTGGAAGAGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAAAAAGTTGAAAGCAAGGGAAGAACAACCTATAACGAGGTTGCAGATGAACTTGTGGCTGAGTTTGCTGATCCTAGCAGTAGTCTTGCATCCCCTGATCAGCAACAATATGATGAAAAGAACATCCGGCGTAGGGTATACGATGCCCTAAATGTTCTCATGGCAATGGACATTATATCGAAGGATAAGAAAGAGATACAATGGAAGGGTTTACCTCGAACGAGTCTGAATGATGTTGAAGAACTAAAGACAGAGAGGCAGGGGCTTAGAAATAGAATAGATAAGAAAGCTGCATACCTGCAAGAGCTGGAGGAGCAATACGTAGGCCTTCAGAATCTGATTCAGCGAAATGAACAATTATACAGTTCTGGAAATGCTCCAAGTGGTGGTGTGTCTTTACCTTTTATCTTGGTGCAGACCCGTCCGCATGCGACAGTTGAAGTAGAAATATCGGAAGATATGCAACTCGTGCATTTTGACTTCAGCAGCACACCTTTTGAGCTCCACGATGACAACTACATATTGAAGGCGATGAAATTTTGTGAGAGACAAGCCGGTGATAATAGTGCGCAGAATTTCATTGCAGACGGAGGGGAAGGTTCTGGAATACAGGTCGTGTCTGTGAGGAAACCAGCATCACCACCTCTTCCGGGAATTCTCAAAGCACGTGTCAAGCACGAACACTAA 999 45.55 MGTRPQNPLREDDDDDLYSGRAATISGQSVSMSGSIGSPSSRSEQTMTTPASDNTFLRLNHLDIHGDDVGSQGAISNKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDVEELKTERQGLRNRIDKKAAYLQELEEQYVGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFSSTPFELHDDNYILKAMKFCERQAGDNSAQNFIADGGEGSGIQVVSVRKPASPPLPGILKARVKHEH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11081748 11089603 + Bpe022993.1 Bpe08g00870 107746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00870 332 MobiDBLite consensus disorder prediction 68 94 - -
Bpe08g00870 332 PANTHER TRANSCRIPTION FACTOR DP 20 332 IPR015648 GO:0005667|GO:0051726
Bpe08g00870 332 SMART DP_2 181 330 IPR014889 -
Bpe08g00870 332 SUPERFAMILY E2F-DP heterodimerization region 180 290 IPR037241 -
Bpe08g00870 332 MobiDBLite consensus disorder prediction 22 49 - -
Bpe08g00870 332 Gene3D Transcription factor DP 180 300 IPR038168 -
Bpe08g00870 332 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Bpe08g00870 332 PIRSF Txn_factor_DP 6 315 IPR015648 GO:0005667|GO:0051726
Bpe08g00870 332 SUPERFAMILY Winged helix DNA-binding domain 94 175 IPR036390 -
Bpe08g00870 332 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Bpe08g00870 332 Gene3D - 86 179 IPR036388 -
Bpe08g00870 332 PANTHER TRANSCRIPTION FACTOR DP 20 332 - -
Bpe08g00870 332 CDD DP_DD 179 282 IPR014889 -
Bpe08g00870 332 MobiDBLite consensus disorder prediction 1 49 - -
Bpe08g00870 332 Pfam Transcription factor DP 182 295 IPR014889 -
Bpe08g00870 332 Coils Coil 183 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00870 K04683 TFDP1; transcription factor Dp-1 - zju:107414839 556.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00869 Bpe-Chr8:11059157 Bpe08g00870 Bpe-Chr8:11081748 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00870 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-59 226.9
Bpe08g00869 . 56 284 E2F-DP Transcription Factor Family AT5G02470 50.4 2.7e-59 225.7
Bpe04g00633 . 18 468 E2F-DP Transcription Factor Family AT2G36010 53.5 1.6e-125 446.4
Bpe08g00221 CCT,ECH 22 460 E2F-DP Transcription Factor Family AT2G36010 52.7 9.7e-118 420.6
Bpe01g00263 CCT,ECH 4 323 E2F-DP Transcription Factor Family AT2G36010 59.1 3.2e-97 352.4
Bpe08g00221 CCT,ECH 10 488 E2F-DP Transcription Factor Family AT5G22220 53.8 1.0e-108 390.6
Bpe01g00263 CCT,ECH 5 350 E2F-DP Transcription Factor Family AT5G22220 57.7 1.4e-94 343.6
Bpe04g00633 . 29 434 E2F-DP Transcription Factor Family AT5G22220 51.8 1.1e-91 334.0
Bpe08g00870 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 1.2e-59 226.9
Bpe08g00869 . 56 284 E2F-DP Transcription Factor Family AT5G02470 50.4 2.7e-59 225.7
Bpe08g00221 CCT,ECH 10 488 E2F-DP Transcription Factor Family AT5G22220 53.8 1.0e-108 390.6
Bpe01g00263 CCT,ECH 5 350 E2F-DP Transcription Factor Family AT5G22220 57.7 1.4e-94 343.6
Bpe04g00633 . 29 434 E2F-DP Transcription Factor Family AT5G22220 51.8 1.1e-91 334.0
Bpe04g00633 . 18 468 E2F-DP Transcription Factor Family AT2G36010 53.5 1.6e-125 446.4
Bpe08g00221 CCT,ECH 22 460 E2F-DP Transcription Factor Family AT2G36010 52.7 9.7e-118 420.6
Bpe01g00263 CCT,ECH 4 323 E2F-DP Transcription Factor Family AT2G36010 59.1 3.2e-97 352.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21783 PF08781 DP 1.00E-41 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00870 Bpe_Chr08 FPKM 8.26718 8.773282 6.970807 5.642841 38.677784 42.395321 41.302498 0.281042 0.461888 0.20094