Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00870 ATGGGTACAAGACCCCAGAATCCATTACGAGAAGATGATGATGACGACCTTTATAGCGGTCGTGCTGCCACAATTTCAGGCCAATCTGTGTCCATGAGTGGCAGCATCGGATCCCCTTCCAGCCGAAGTGAGCAAACGATGACTACCCCAGCCAGTGACAATACTTTCCTTCGATTAAACCACCTTGATATTCATGGAGACGATGTCGGATCGCAAGGCGCTATTTCTAACAAGAAGAAAAAGAGAGGTCAGCGTGCTGTTGGAGGCGATAAGAGTGGAAGAGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAAAAAGTTGAAAGCAAGGGAAGAACAACCTATAACGAGGTTGCAGATGAACTTGTGGCTGAGTTTGCTGATCCTAGCAGTAGTCTTGCATCCCCTGATCAGCAACAATATGATGAAAAGAACATCCGGCGTAGGGTATACGATGCCCTAAATGTTCTCATGGCAATGGACATTATATCGAAGGATAAGAAAGAGATACAATGGAAGGGTTTACCTCGAACGAGTCTGAATGATGTTGAAGAACTAAAGACAGAGAGGCAGGGGCTTAGAAATAGAATAGATAAGAAAGCTGCATACCTGCAAGAGCTGGAGGAGCAATACGTAGGCCTTCAGAATCTGATTCAGCGAAATGAACAATTATACAGTTCTGGAAATGCTCCAAGTGGTGGTGTGTCTTTACCTTTTATCTTGGTGCAGACCCGTCCGCATGCGACAGTTGAAGTAGAAATATCGGAAGATATGCAACTCGTGCATTTTGACTTCAGCAGCACACCTTTTGAGCTCCACGATGACAACTACATATTGAAGGCGATGAAATTTTGTGAGAGACAAGCCGGTGATAATAGTGCGCAGAATTTCATTGCAGACGGAGGGGAAGGTTCTGGAATACAGGTCGTGTCTGTGAGGAAACCAGCATCACCACCTCTTCCGGGAATTCTCAAAGCACGTGTCAAGCACGAACACTAA 999 45.55 MGTRPQNPLREDDDDDLYSGRAATISGQSVSMSGSIGSPSSRSEQTMTTPASDNTFLRLNHLDIHGDDVGSQGAISNKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDVEELKTERQGLRNRIDKKAAYLQELEEQYVGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFSSTPFELHDDNYILKAMKFCERQAGDNSAQNFIADGGEGSGIQVVSVRKPASPPLPGILKARVKHEH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11081748 11089603 + Bpe022993.1 Bpe08g00870 107746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00870 332 MobiDBLite consensus disorder prediction 68 94 - -
Bpe08g00870 332 PANTHER TRANSCRIPTION FACTOR DP 20 332 IPR015648 GO:0005667|GO:0051726
Bpe08g00870 332 SMART DP_2 181 330 IPR014889 -
Bpe08g00870 332 SUPERFAMILY E2F-DP heterodimerization region 180 290 IPR037241 -
Bpe08g00870 332 MobiDBLite consensus disorder prediction 22 49 - -
Bpe08g00870 332 Gene3D Transcription factor DP 180 300 IPR038168 -
Bpe08g00870 332 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Bpe08g00870 332 PIRSF Txn_factor_DP 6 315 IPR015648 GO:0005667|GO:0051726
Bpe08g00870 332 SUPERFAMILY Winged helix DNA-binding domain 94 175 IPR036390 -
Bpe08g00870 332 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Bpe08g00870 332 Gene3D - 86 179 IPR036388 -
Bpe08g00870 332 PANTHER TRANSCRIPTION FACTOR DP 20 332 - -
Bpe08g00870 332 CDD DP_DD 179 282 IPR014889 -
Bpe08g00870 332 MobiDBLite consensus disorder prediction 1 49 - -
Bpe08g00870 332 Pfam Transcription factor DP 182 295 IPR014889 -
Bpe08g00870 332 Coils Coil 183 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00869 Bpe-Chr8:11059157 Bpe08g00870 Bpe-Chr8:11081748 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21783 PF08781 DP 1.00E-41 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00870 K04683 - zju:107414839 556.214