Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00875 TTCTTAGATATGGTCGATGTAGCTGACAAATTAGCGTATTTTCAAGCAATAACAGGCGTAGAAGATCCTGATTTCTGCACGGAGATCCTTGCCGCTCATGGCTGGGACCTCGAGCTTGCGATCTCCTCTTTTACGGACGATTCGGACCGTCCTGAGACTTCTGGCGCCGCGGACACGAGTACTGGCTTTGAAGATTCCGGTGGTATCGCGCATTCTGGCGTTGAATCGTCACAAGCCCTAAATAGATCCGACGAGTTGGTTGAGAATAGGGTGGCTGGCTCTGGTTTGGCATGGAAACTTATAACGCTTCCGATTTCTGTGGTTTCTGGTAGTTTAGGGTTAGTATCTAATGCGATTGGGTTCGGCTTATGGGCTGCCGGTGGTGTACTTTCGTATTCCCTAGGGATGATTGGATTCAGCTCTGCTTCGGGCCCTAATGCTGATTCGTCCGCTCCCTTGGTTTCCGTGTCTGCGGCAGCATCGGAAGCGATGAACTTTGTGGCAGCATTTGAAAGGGATTATGGGACGAATCGTCCAAATTTTATGCATGAAGGGTTTATGGACGCGTTGCAAAGGTCAAGAAATGAATTTAAATTACTGTTTGTGTACCTGCACTCGCCAGATCATCCAGACACGCCATTTTTCTGTCAGAGAACTCTATGCTCGGAGATTCTAGCAGCGTTCGTGAACGAGAATTTTGTGTCATGGGGAGGAAGTATACGGGCCAGTGAAGGTTTCAAGATGAGCAATAGCTTGAAAGCTTCCCGTTTTCCATTCTGTGCTGTGGTCATGGGAGCAACGAATCAAAGAATCACATTGCTCCAGCAGGTTGAGGGAACAAAATCTGCGGAAGAAATGCTTGCAATATTGCAGAAAGTTCTAGAAGACAGTGCCCCAGTTCTTGTTGCAGCAAGGCTTGATGCAGAAGAACGAAGAAATAACACGCGCTTGAGAGAGGAGCAAGATGCTGCTTACAGAGCAGCTCTTGAAGCTGATCAAGCAAGGGAACGGCAGAGGAGAGCGGAACAAGAACGCCAGCAAAGGGAAGCTGCTGAGTCTGAGAGGAAACAGAAGGAGGAAGATGAAGCTCGTGCAAGAGCAGCCCTTGAAGCTGCCGAGAAAGAGGTCGCCAGGGCTAGAATTCGGCAGGAGAAAGCAATGTCACTTGGCGCTGAACCTGAAAAAGGACCCAACGTCACACATGTTTTGATACGGTTTCCAACTGGAGAACGAAAAGAAAGGAGATTTTACAGCACTTCTACTATCCGGTCAATATATGACTATATTGATTCTTTGGGTTGTTTAGAGATTGAGGATTATAGCCTCGTCTCAAACTTCCCTCGAGTTATTTATGGCCCAGAGAAGTACTTGATGTCTTTGAAAGAAGCCGGATTACACCCTCAGGCAAGCCTTTTTGTCGAGCCAAACTCGTGA 1434 47.7 FLDMVDVADKLAYFQAITGVEDPDFCTEILAAHGWDLELAISSFTDDSDRPETSGAADTSTGFEDSGGIAHSGVESSQALNRSDELVENRVAGSGLAWKLITLPISVVSGSLGLVSNAIGFGLWAAGGVLSYSLGMIGFSSASGPNADSSAPLVSVSAAASEAMNFVAAFERDYGTNRPNFMHEGFMDALQRSRNEFKLLFVYLHSPDHPDTPFFCQRTLCSEILAAFVNENFVSWGGSIRASEGFKMSNSLKASRFPFCAVVMGATNQRITLLQQVEGTKSAEEMLAILQKVLEDSAPVLVAARLDAEERRNNTRLREEQDAAYRAALEADQARERQRRAEQERQQREAAESERKQKEEDEARARAALEAAEKEVARARIRQEKAMSLGAEPEKGPNVTHVLIRFPTGERKERRFYSTSTIRSIYDYIDSLGCLEIEDYSLVSNFPRVIYGPEKYLMSLKEAGLHPQASLFVEPNS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11134949 11137762 + Bpe022997.1 Bpe08g00875 107751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00875 477 MobiDBLite consensus disorder prediction 46 61 - -
Bpe08g00875 477 CDD UBX 401 474 - -
Bpe08g00875 477 MobiDBLite consensus disorder prediction 46 68 - -
Bpe08g00875 477 Pfam UBX domain 395 475 IPR001012 GO:0005515
Bpe08g00875 477 MobiDBLite consensus disorder prediction 331 367 - -
Bpe08g00875 477 CDD UBA_FAF 14 45 - -
Bpe08g00875 477 Gene3D Glutaredoxin 150 299 - -
Bpe08g00875 477 SMART ubx_3 393 475 IPR001012 GO:0005515
Bpe08g00875 477 SUPERFAMILY Ubiquitin-like 356 475 IPR029071 -
Bpe08g00875 477 CDD UAS 181 296 - -
Bpe08g00875 477 ProSiteProfiles UBX domain profile. 395 473 IPR001012 GO:0005515
Bpe08g00875 477 SUPERFAMILY Thioredoxin-like 160 304 IPR036249 -
Bpe08g00875 477 SUPERFAMILY UBA-like 8 47 IPR009060 GO:0005515
Bpe08g00875 477 Gene3D - 396 476 - -
Bpe08g00875 477 Gene3D - 5 54 - -
Bpe08g00875 477 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 4 475 - -
Bpe08g00875 477 Pfam UBA-like domain 9 49 - -
Bpe08g00875 477 Coils Coil 326 389 - -
Bpe08g00875 477 PANTHER FAS-ASSOCIATED PROTEIN 4 475 - -
Bpe08g00875 477 SMART 45neu3 165 291 IPR006577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00875 K18726 FAF2, UBXD8; FAS-associated factor 2 - zju:107430076 630.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00124 Bpe-Chr7:885780 Bpe08g00875 Bpe-Chr8:11134949 4.77E-13 dispersed
Bpe08g00875 Bpe-Chr8:11134949 Bpe15g00644 Bpe-Chr15:17221180 5.27E-74 dispersed
Bpe08g00875 Bpe-Chr8:11134949 Bpe05g00630 Bpe-Chr5:20190697 1.06E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
Vvi2g525 . . . . . . Bma07g01599 . . . . Cma15g01127 . Car15g01032 . . . . . . . . . . . . . . . . . Cone8ag0393 . Cone6ag0676 Cone9ag0681 . Csa05g00416 Chy09g01093 . . Blo19g00255 . Bda09g00097 Bpe08g00875 . . . . . Cmo15g01186 . . . . . Cpe13g00229 Bhi12g00436 . . Lac11g2279 . . Lcy12g1824 Cla09g01215 Cam09g1280 Cec09g1296 Cco09g1326 . . Cre09g1240 . . . Cme09g01622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00875 Bpe_Chr08 FPKM 2.017509 2.649843 4.39509 4.011234 8.686696 7.239729 9.538848 3.189914 3.263937 4.085346