Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00888 ATGTTTTCATGCGTCGCATGCACGAAGCGACTGGGAGAGACAGAGGGAGCAGATGGAAGAGTGGGAAGCAGCAGCAGCACACCAAGTACAAAAGAAGCCGTCAAAAGCCTGACGGCGCAGCAGATTAAGGATATGGCGATAAAACTCTCCTGTGCCAATAGGCAACGTCAGTCATATGCTGGCTCGGGGCAGTACAAGAAAGGACACATGCCTTACTCGAGTTTTGACGTGGCCGACTCAAACAAAATTCCATTTCCCTACTACGGAGGTGGAAGCTCAACTTCAACGCCGACATGGAATTTTACAACATCAAATGCAAAAACTTCTCGAGTTTTGAGCACTCAATCCGATGGTAATGTAGACTCTATCTGTACTCGGTCGTGTAATGTGGTGTTAGAAAATGACGACGAGCCGGAGGAGTGGATGGCACAGGTTGAGCCTGGGGTTCATATTACTTTTATGTCACTCCCTAATGGTGGAAATGATCTAAGACGAATTCGATTCAGCCGAGAAATGTTCAACAAATGGCAAGCTCAGCAATGGTGGGGCAAAAACTATGACCGGATCATGGAGCTTTACAATGTCCGAAGATTCAATCGGCAGGCTCTTCACACTCCGACGAGGTCAGAGGATGCAGTAAGCCAATTCGAGCTTTACCTGTTCCTGAGTTCCAATTTTCAAATGTGTCTTCACCGAAAAATGTCGAAGATGGGATCGGCCATGGGAAATGGTCCAAGGGGCGAGCCACCATCTCTTGATGAATCAAGAATGACAACCTCATCACAGGATGACCCATCCGTCTCTATAAGCAATGCAAGCGAAATCGAGTCCGAATGGGTCGAGGAGGATGAACCCGGTGTGTATATAACTGTCAGACAGCTTGCGGACGGGACGAGGGAGCTCCGTCGAGTCAGATTCAGCCGGGAGAAGTTTGGAGAGTTACGAGCGAAGCAATGGTGGGAAGAGAATAGAGAGAGAGTACAAGCTGAGTACCTATGA 999 48.35 MFSCVACTKRLGETEGADGRVGSSSSTPSTKEAVKSLTAQQIKDMAIKLSCANRQRQSYAGSGQYKKGHMPYSSFDVADSNKIPFPYYGGGSSTSTPTWNFTTSNAKTSRVLSTQSDGNVDSICTRSCNVVLENDDEPEEWMAQVEPGVHITFMSLPNGGNDLRRIRFSREMFNKWQAQQWWGKNYDRIMELYNVRRFNRQALHTPTRSEDAVSQFELYLFLSSNFQMCLHRKMSKMGSAMGNGPRGEPPSLDESRMTTSSQDDPSVSISNASEIESEWVEEDEPGVYITVRQLADGTRELRRVRFSREKFGELRAKQWWEENRERVQAEYL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11282412 11284732 - Bpe023012.1 Bpe08g00888 107764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00888 332 Coils Coil 332 332 - -
Bpe08g00888 332 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 332 IPR044532 -
Bpe08g00888 332 Pfam Transcription factor BRX N-terminal domain 24 52 IPR027988 -
Bpe08g00888 332 MobiDBLite consensus disorder prediction 15 34 - -
Bpe08g00888 332 ProSiteProfiles BRX domain profile. 139 194 IPR013591 -
Bpe08g00888 332 MobiDBLite consensus disorder prediction 253 275 - -
Bpe08g00888 332 MobiDBLite consensus disorder prediction 237 275 - -
Bpe08g00888 332 MobiDBLite consensus disorder prediction 19 34 - -
Bpe08g00888 332 ProSiteProfiles BRX domain profile. 277 332 IPR013591 -
Bpe08g00888 332 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 332 - -
Bpe08g00888 332 Pfam Transcription factor regulating root and shoot growth via Pin3 276 331 IPR013591 -
Bpe08g00888 332 Pfam Transcription factor regulating root and shoot growth via Pin3 139 193 IPR013591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00249 Bpe-Chr7:1768412 Bpe08g00888 Bpe-Chr8:11282412 2.99E-136 dispersed
Bpe08g00888 Bpe-Chr8:11282412 Bpe10g00697 Bpe-Chr10:13420879 1.39E-84 dispersed
Bpe11g00363 Bpe-Chr11:2738098 Bpe08g00888 Bpe-Chr8:11282412 5.54E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00888 - - pvy:116141091 402.905