Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00893 ATGGCGGCCTTTACCTCCCCCACCTCCGTTACTTCTTCTTCTTCTTCTTCTTCCACTAGACGACTACTTTCCCCCCTTTACCCTGCCTCTAAAACCCTGTTTTTCACCTCCAAAGTTGCCTCCTTCTACCCTCTTTCCTCCACCGCGTTCCCGAAACTCTTTCCCCTCAAATCCTTTTCCAAATCAACAGCAGATCTTTCCCCCATCGACGGCGCTTCCTCCTCCTCCGACGGTACAGCCTCCCCCGCTGAATCTTCGCGATCCCTCAAATCCCGACTCTGCAATGGCGAAACCCTCTATGGTCTTTTTCTTCTCAGCTTCTCCCCCACCCTGGCAGAGATTGCCGGTCTCGCCGGATACGACTTTGTCGTCGTTGACATGGAACACGGCTCGGGCGGCATCTCCGAATCCCTCGATTGCCTCCGCGCCCTGGCCGCCGTCAGAACCGCTGCGATTCTCCGGTTGCCGGAGAGCTCAGCGATGTGGGCAAAGAAAGCCCTAGATCTGGGCCCGCAGGGCATCATGTTCCCGATGATCGAATCCTCCAAAGACGCGAAGAAAGCAGTGTCATACTGCAGGTATCCACCAGCAGGCGTCCGGGGGGCGGCGCACCCGGTGGTGCGAGCATCAAAGTACGGCATCGATGAAGGGTATTTGAGTAATTACGAAGAAAATCTTCTAATAATGTGCCAGGTTGAATCAGAGCAAGGGGTGAAGAAGATAGGAGAGATCTCAGCCGTTGATGGGGTAGACTGCATTCAAATGGGACCGATAGATCTAAGCGCCAGCATGGGGTATTTGTGGGACCCAGGGAACAAGAAGGCGAGGGAGATGCTGAGGGTGGCAGAGAAGGGTGTGCTGGCGTCCAAATCAGACGGTGGAGGTGGAGCTTTCTTATCAGGGTTCGCTATGCCGTACGATGGGCCCACTGATCTGCTGAAACGCGGGTACCATATGGTGTCTGGGGCCGTCGACGTGGGTATGTTCAGGAGCGCCGCGGTGGAGGATGTGAGTAGGTTCAAGATGGCCTTGATGGACGGCTCCGATGAAGAAGATTTCGAAGATCATAAGGATTCTGATGAAAAAGAGCAAAAGATGGCCAAACAGGGCCATTTTCTGCAAGCTTTTAAGCTCTTCATCTTCTCAACAATGGCGGCCACCTCCATCTCCTCCCATTACAAAGTCGGAGATTTAGATTCCTGGGGCATCCCTCCCTCTGTAAACCCATCCCTCTACACCAAATGGCCCAAATACCACGATCTCAAGATCGGCGATTCCATCTTGTTTCTTTACCCACCGAGTCAAGACTCAGTGATTCAAGTGAGTTCGCAATCCTACTATGGCTGCAACCTCGCAGATCCGATAATGTATATGAACGATGGAAACTCAGTTTTCAATATTACTTCGTACGGAGATTTGTATTTCACGAGTGGAGAGGCTGGGCACTGCGAGAAGAAACAGAAGCTTCATATTTCTGTGCTTTCTGGAAATGGGTCTGCGTCTGCTTCCTCAGAAGCCCCCCAGATTTCGCCTTCTTATCCCACTGTTTTTGGGTCGATTCCATTGGGGCATTCTGCTTCTCCTTCTTCTTCTTCTTCTCCGCGAGTGCATAGCTTATCAGTAACAATGGCGGGTCTTGCTGGATTCGCTTTTGCTTTTACTTTTTAA 1668 51.86 MAAFTSPTSVTSSSSSSSTRRLLSPLYPASKTLFFTSKVASFYPLSSTAFPKLFPLKSFSKSTADLSPIDGASSSSDGTASPAESSRSLKSRLCNGETLYGLFLLSFSPTLAEIAGLAGYDFVVVDMEHGSGGISESLDCLRALAAVRTAAILRLPESSAMWAKKALDLGPQGIMFPMIESSKDAKKAVSYCRYPPAGVRGAAHPVVRASKYGIDEGYLSNYEENLLIMCQVESEQGVKKIGEISAVDGVDCIQMGPIDLSASMGYLWDPGNKKAREMLRVAEKGVLASKSDGGGGAFLSGFAMPYDGPTDLLKRGYHMVSGAVDVGMFRSAAVEDVSRFKMALMDGSDEEDFEDHKDSDEKEQKMAKQGHFLQAFKLFIFSTMAATSISSHYKVGDLDSWGIPPSVNPSLYTKWPKYHDLKIGDSILFLYPPSQDSVIQVSSQSYYGCNLADPIMYMNDGNSVFNITSYGDLYFTSGEAGHCEKKQKLHISVLSGNGSASASSEAPQISPSYPTVFGSIPLGHSASPSSSSSPRVHSLSVTMAGLAGFAFAFTF 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11308293 11310662 - Bpe023017.1 Bpe08g00893 107769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00893 555 ProSiteProfiles Phytocyanin domain profile. 391 495 IPR003245 GO:0009055
Bpe08g00893 555 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN 82 351 - -
Bpe08g00893 555 Pfam Plastocyanin-like domain 410 485 IPR003245 GO:0009055
Bpe08g00893 555 Gene3D - 84 350 IPR040442 -
Bpe08g00893 555 MobiDBLite consensus disorder prediction 1 21 - -
Bpe08g00893 555 Pfam HpcH/HpaI aldolase/citrate lyase family 100 331 IPR005000 GO:0003824
Bpe08g00893 555 Gene3D - 391 506 IPR008972 -
Bpe08g00893 555 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 87 343 IPR015813 GO:0003824
Bpe08g00893 555 PANTHER 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE 82 351 - -
Bpe08g00893 555 SUPERFAMILY Cupredoxins 391 494 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00893 - - - pvy:116120881 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00893 Bpe-Chr8:11308293 Bpe14g00229 Bpe-Chr14:2464490 1.18E-20 dispersed
Bpe08g00893 Bpe-Chr8:11308293 Bpe10g00662 Bpe-Chr10:13208226 7.01E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g224 . . . . . . Bma07g01016 . Cmo06g00593 . . . . . . . . . . . . . . . Cla10g00088 Cam10g0088 Cec10g0092 Cco10g0094 Clacu10g0089 Cmu10g0936 Cre10g0350 Cone8ag0534 . . . Lsi07g01117 . . Cme06g02397 . Blo19g00144 . . Bpe08g00893 . . . . . . Cma06g00591 . . . Cpe08g00912 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g00893 . 390 531 Phytocyanin Superfamily AT1G64640 57.2 6.0e-39 157.5
Bpe02g01264 . 12 178 Phytocyanin Superfamily AT5G25090 51.1 2.6e-39 158.7
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013647 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00893 Bpe_Chr08 FPKM 10.753268 14.097009 57.505379 59.442856 8.000847 4.985087 7.939611 10.118607 11.88133 10.8821