Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00900 GAGATGGGATTTCCAGATCTGATCAAAGAAGATTGGGAACTATCACAGCTCGGAAAATCTCCCTTCCGATCTGATATTTGGAATAACGTGAACTCCATTGATGCAGGTTTGCTTTCTGGATCTCAAGAAGAATGGAGTGCAGTCCAGGAGAAGCAATACCCAGAGAAGCGCGGAAAGATCGATACTTATCTTCTGCAGGGAGGGTCATCGTTGGATTCTGGCCGATCCAATTCCGACGGAGACTTCGATCGGATCAATCAAACCAAAAGACGAGGGAGAAAGCCGGAGGAACAAAAGGAAACGGGGGTCAACCACGTGCAGGCGGAGAGGCAGCGAAGAGAGAAGCTGAACCGGAGATTTTATGCTCTCCGATCAGCCGTTCCAAATGTGTCTAAGATGGACAAAGCCTCTTTACTTGCCGACGCAGTTGTGTACATAAACAAGCTAAAAGCAAAGATTGAAGAACTGAAACTCCAACTGCAATCTATGAATAGTCCTAAACTGTCGACTTCCGTAGCTAACGCTGCTACAGATTTCATCTTTAACGACGGGGAATGGTCGTCGGAAAATATTTTTGACAACGTTTACAAAATCCAACCACTGTCCTTGATTGGTGGGTCCGCCGCCATTGACGTGGACGTGAAGATTATGGGCACGGAGGCTGTTATCCGCGCCCACGGCCATGATCAGGACCATCCACCGGCTAGATTGATGAACGTTCTTCGAGAGCTAGATCTTCAAATTCACCACGCAAGCATATCGAAGGTGAAAGAGCTGATGCTGCACGATGTTGTGGTCAGACTTCCTGAAGGACTTAACAATGAGAAAGCCATTGGAAGTGCTATTTTCCAAAAACTGAATAACTAA 867 46.71 EMGFPDLIKEDWELSQLGKSPFRSDIWNNVNSIDAGLLSGSQEEWSAVQEKQYPEKRGKIDTYLLQGGSSLDSGRSNSDGDFDRINQTKRRGRKPEEQKETGVNHVQAERQRREKLNRRFYALRSAVPNVSKMDKASLLADAVVYINKLKAKIEELKLQLQSMNSPKLSTSVANAATDFIFNDGEWSSENIFDNVYKIQPLSLIGGSAAIDVDVKIMGTEAVIRAHGHDQDHPPARLMNVLRELDLQIHHASISKVKELMLHDVVVRLPEGLNNEKAIGSAIFQKLNN 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11410234 11411100 + Bpe023023.1 Bpe08g00900 107776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00900 288 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 1 286 - -
Bpe08g00900 288 Coils Coil 139 166 - -
Bpe08g00900 288 MobiDBLite consensus disorder prediction 77 111 - -
Bpe08g00900 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Bpe08g00900 288 MobiDBLite consensus disorder prediction 68 111 - -
Bpe08g00900 288 PANTHER MYC 1 286 IPR045084 GO:0003700|GO:0006355
Bpe08g00900 288 SMART finulus 106 155 IPR011598 GO:0046983
Bpe08g00900 288 Gene3D - 91 165 IPR036638 GO:0046983
Bpe08g00900 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 165 IPR036638 GO:0046983
Bpe08g00900 288 Pfam Helix-loop-helix DNA-binding domain 104 149 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00900 - - K13422 pvy:116120907 238.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe07g00211 Bpe08g00900 CCT
Bpe07g00211 Bpe08g00900 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00833 Bpe-Chr8:10483940 Bpe08g00900 Bpe-Chr8:11410234 3.85E-39 dispersed
Bpe08g00900 Bpe-Chr8:11410234 Bpe11g00336 Bpe-Chr11:2441302 4.74E-43 dispersed
Bpe08g00900 Bpe-Chr8:11410234 Bpe04g00962 Bpe-Chr4:6548845 6.93E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018153 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21785 PF00010 HLH 5.10E-10 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00900 Bpe_Chr08 FPKM 2.192308 1.462172 0.890439 0.958684 2.868693 2.903098 3.461992 0.690419 0.443344 0.621214