Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00985 ATGGATTCCAAATTTCTCAGAGTCGGCGCTCTTGAAAATAGGTTTGATTCCTCTTTCCATGAACAAAAATGGGTATGCGAAGAACCGACGTATTCTTCGCTAAAAGAGGTAAAATATTTGGAATATGATAACAGTACGATGAACATTTTAGCTGTGTTTTCACTAGCAGCGATGAAGATCATCGGGTTTCAGTACCATTTATTTCTGAACCTTCTCAAATTCCCATTCCGATTGTGTTATTTTTCATTAATGTTGTTGGTCTTCCCGTTTCAAACTCTCAGAGAGATTAGAAGGTGTTTGACAAAATGTCTGCTCAGAATGTGCGGTATGAGTTATAGGTATGTTGTCTCTGTTGCGTTTGGATACTTGGATGCACAAAGATCGAGAGGAATAAAGATGGGTAAGGCTGTGTTTTGGGCTATGGCCGGCTGTTTCATCCTCTTAGGACTGCTTTTCTCGAGCTTTCTCGTCGGAGGTTTTCTGATGAAAATTCTGGTGGAAAATCCGATTCAGATAAAGCAGGCTCTGACTTTTGATTACACTAAACCCACTCCTGTCGGCTTTGTGCACATTGCGCCGTATTCTGCCGTTGGATTGAAAGATGCCATGGAAGTCGAGAATCGAGCCAAAACTCGGATAATTCCGTATAATCGGAAAGTGCAGCTCATTGTTACGTTGACTCTGCCTGAATCGGAGTACAATAGAAAGCTTGGAGTTTTCCAGGTGAGGGTAGAAAGCCTGTCAGCCAATGGAAACGTGACAGCCAGTTCAAGCTATCCATGTATGCTGAAATATAAAAGCAAAACCATATACCAAATTGAAACTTTGTTAAAGATTGCTACGCTCATTACTGGGTTACAATCAGAATCACAGATTCTCAACATAAAGACGAGCCACTTCACAGAAGGACTCGACCCTACGACCTCCTTGAAGGTGACCCTCGAACAGCGAGCTGGAATTCCGGCCGGAGCCGGTTTGCCAGAAACCTATGGGGCGTCGATAGGACTCGAGTCCGAGCTGCCTAAATTGAAAACGGTCATTTGGAATTGGAGAAGAACACTCTTTGTATGGACGAGTTTCATGTTGTTCTTCTTGCAGTTGGTGGTTGTAGTGCTGTTCTTTACTCCAATCCTTGTTCCTCAGGTGAGATCGAGTATTATTAAGAGACGGAAATGTTCTAATTTGAAGATGATGTCTTGGTATAGAAAGGGTTGA 1215 42.63 MDSKFLRVGALENRFDSSFHEQKWVCEEPTYSSLKEVKYLEYDNSTMNILAVFSLAAMKIIGFQYHLFLNLLKFPFRLCYFSLMLLVFPFQTLREIRRCLTKCLLRMCGMSYRYVVSVAFGYLDAQRSRGIKMGKAVFWAMAGCFILLGLLFSSFLVGGFLMKILVENPIQIKQALTFDYTKPTPVGFVHIAPYSAVGLKDAMEVENRAKTRIIPYNRKVQLIVTLTLPESEYNRKLGVFQVRVESLSANGNVTASSSYPCMLKYKSKTIYQIETLLKIATLITGLQSESQILNIKTSHFTEGLDPTTSLKVTLEQRAGIPAGAGLPETYGASIGLESELPKLKTVIWNWRRTLFVWTSFMLFFLQLVVVVLFFTPILVPQVRSSIIKRRKCSNLKMMSWYRKG 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12227341 12228653 + Bpe023109.1 Bpe08g00985 107861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00985 404 Pfam Putative adipose-regulatory protein (Seipin) 150 362 IPR009617 GO:0019915
Bpe08g00985 404 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 26 391 IPR009617 GO:0019915
Bpe08g00985 404 PANTHER SEIPIN-3-LIKE 26 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00985 K19365 BSCL2; seipin - cit:112498102 342.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00789 Bpe-Chr1:8318213 Bpe08g00985 Bpe-Chr8:12227341 3.68E-81 dispersed
Bpe02g01330 Bpe-Chr2:16907812 Bpe08g00985 Bpe-Chr8:12227341 3.18E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g76 . . . . . Bpe08g00985 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01144 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019416 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00985 Bpe_Chr08 FPKM 5.529862 9.954352 6.604749 9.089402 4.629224 2.914892 6.078431 5.64318 5.378356 7.251476