Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00987 ACAGCAAAAATGGCTGAAATTGAAACCCTTGGCATACTTCAAGATATCGACGCTCTAATCTCCGATCGACTTCAAGTGGTTTCCTACAAGTGGCTAAGTCGCAATTATTTGGTGTCATCTAACGTTGCAAAGAGATTGCTTGAAGACTTCGTTGAAAAGTGTGAAACTAGATTGCAAGTGATTTATACCTTGTCTGGCTGGTTGAAGAAGGATCCATTAAGCTATCATGTGAAGCTTGTTTGTGGGCCAAAACTTGCAGAAGCTAGGCAGGATTTCGTTGGAAACTGCTCGGTTCATGTTTATAGTGTGCAAGCTTGCATTCCAAAGGACCCAGCTGCTCTGTGGAATTTTGAGTTTGTACAAGCGGAAGAGCTTTTTAAGCAGCCCTTAGCAGTGGATAATTGCTTACGAGATAACAGATTCTGTGGAATTACTAACTCTTTTGTCAAACGCAATGTGGAGGGAGTAGCCATGAGCTCAGCATCGCTGCCATCCAAAAGTGAGGGAGGAAATGGACAGCTCAAAAGCAACATGGTGCATAAAAAAATAACCGTTCCACAACCTCAAGAATATAAAGTGCAGGAATATGACCCAAAACTTGGTGTACAGTCTGCTGTGAAAAAGGAAGTCAGCACTGAATGTAATGTAACAGGATCTCATCATCAAGCTAACAAGCATCCTTCAAACGAGGAAAAATTTAATTCCCTTCCTGGTATCAAAAAGAAAGCCCAAAATGATAAAAATTCCGCCTCTACTGGCAGTTCATTGGCAAATATGTGGGGTCGTGCATCTACTAAGTCAAAGCCTTGTTACCATGAGGATGCTAATAAAATTGTTTCAGTTTCAACTGCATCTAAGGTGGAGGCTCAAATTTGTGCTCGTGAAGCAGTAGAGAGTTTCCATAGTGATGATGATAAGGAAGATGTCAAGTTAAGGAAAGCCTCCAATGGTGAAGGCAATAGAAAAAGGAGGGTTGTCTTCGATTTTTCAGATGATGAATATGAAGATACAGTCGATTTAGGATTACCAGATAATCCACCGAGGATAGCACGTCAAGATCCGGATAGAGGTACTTTTGTTTCAGAGACTACGAGTGGGAACTCTGGCAAACAACTTGATGATAAACCAATGTTCAAGGGAGATGAAACATCTGAGAGAGAATCTGTAGCAGAAAAAATTTCTTTAGTTACAACAAAAAAATTAGAGGCCCGGAGCTGCTTGCATGATAAAGACTTGAAGAATAATGATAAGTCTACAAATGCTGCTCCAACTTCTCCGAAGAGGAGAAAAGTGTTGAAAACACACATCGATGAGCGCGGCAGAGAAGTTATTGAGGTGATCTGGGAGGGTGAGGAGACAGAAGCAAAGAAAGAAGAGATCTCTTTGATGAAGAATTCTAGTGAGAACACAGTCAAGAACGCTGTTATTAATAGGCCTCCTCCAGCAAAGAAGTCACCAGCCCTTGGATCAAATGCTAGTAGTAAAGCAGGAAGTAAGAAGGGTGGAGCAGGGAACAATCCCAAACAAGGAAATATTCTTTCGTTCTTCAAGAAGGTTTGA 1560 41.28 TAKMAEIETLGILQDIDALISDRLQVVSYKWLSRNYLVSSNVAKRLLEDFVEKCETRLQVIYTLSGWLKKDPLSYHVKLVCGPKLAEARQDFVGNCSVHVYSVQACIPKDPAALWNFEFVQAEELFKQPLAVDNCLRDNRFCGITNSFVKRNVEGVAMSSASLPSKSEGGNGQLKSNMVHKKITVPQPQEYKVQEYDPKLGVQSAVKKEVSTECNVTGSHHQANKHPSNEEKFNSLPGIKKKAQNDKNSASTGSSLANMWGRASTKSKPCYHEDANKIVSVSTASKVEAQICAREAVESFHSDDDKEDVKLRKASNGEGNRKRRVVFDFSDDEYEDTVDLGLPDNPPRIARQDPDRGTFVSETTSGNSGKQLDDKPMFKGDETSERESVAEKISLVTTKKLEARSCLHDKDLKNNDKSTNAAPTSPKRRKVLKTHIDERGREVIEVIWEGEETEAKKEEISLMKNSSENTVKNAVINRPPPAKKSPALGSNASSKAGSKKGGAGNNPKQGNILSFFKKV 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12237667 12243120 + Bpe023111.1 Bpe08g00987 107863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00987 519 MobiDBLite consensus disorder prediction 212 235 - -
Bpe08g00987 519 Pfam DNA polymerase subunit Cdc27 26 518 IPR019038 GO:0005634|GO:0006260|GO:0043625
Bpe08g00987 519 MobiDBLite consensus disorder prediction 374 390 - -
Bpe08g00987 519 MobiDBLite consensus disorder prediction 487 512 - -
Bpe08g00987 519 Gene3D DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 10 151 IPR041913 -
Bpe08g00987 519 MobiDBLite consensus disorder prediction 337 390 - -
Bpe08g00987 519 MobiDBLite consensus disorder prediction 405 431 - -
Bpe08g00987 519 MobiDBLite consensus disorder prediction 357 371 - -
Bpe08g00987 519 MobiDBLite consensus disorder prediction 462 519 - -
Bpe08g00987 519 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 4 518 IPR019038 GO:0005634|GO:0006260|GO:0043625
Bpe08g00987 519 MobiDBLite consensus disorder prediction 241 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00987 K03504 POLD3; DNA polymerase delta subunit 3 - jre:109004847 522.702
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g90 . . . . . Bpe08g00987 . . . . Cma01g01250 . . . . . . . . . . . . . . . . . . . . Cone6ag0201 Cone9ag0232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010815 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00987 Bpe_Chr08 FPKM 0.445307 0.526997 1.654277 1.37016 26.969481 26.629383 25.277519 0.626171 1.031451 0.828663