Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00988 ATGGGGTGCGCTGGATCGTCGCAGACTAAAGGGGATGGAATTGTGAAGAAAATTAGAAAGCCAAAACCCTGGAAGCATCCACAGCCTTTAACAAAGACTCAACTTGCGCAGCTTCGTGATGAGTTTTGGGACACTGCACCTCACTATGGTGGTAGGAAAGAAATTTGGGATGCACTTAGAGCTGCTTCAGAAGCTGATCTATCGCTTGCACAAGCCATTGTGGAAAGCGCGGGAGTAATTATTCAAAGTGCTGATATGACAATATGTTATGATGAGAGAGGTGCAAAATATGAACTACCCAAGTATGTTCTAAGCGAGCCAACCAACTTGATTCGAGAAAGTACATGA 348 44.25 MGCAGSSQTKGDGIVKKIRKPKPWKHPQPLTKTQLAQLRDEFWDTAPHYGGRKEIWDALRAASEADLSLAQAIVESAGVIIQSADMTICYDERGAKYELPKYVLSEPTNLIREST 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12243648 12246232 - Bpe023112.1 Bpe08g00988 107864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00988 115 Gene3D - 31 104 IPR038169 -
Bpe08g00988 115 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 112 - -
Bpe08g00988 115 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 112 IPR039869 -
Bpe08g00988 115 MobiDBLite consensus disorder prediction 1 28 - -
Bpe08g00988 115 Pfam Ubiquitin-binding domain 16 112 IPR032752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00988 - - - qsu:112023216 220.705
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g00988 Bpe11g00442 CCT
Bpe08g00988 Bpe11g00442 ECH
Bpe08g00988 Bpe09g00264 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00738 Bpe-Chr8:8940732 Bpe08g00988 Bpe-Chr8:12243648 4.72E-83 transposed
Bpe11g00442 Bpe-Chr11:3348547 Bpe08g00988 Bpe-Chr8:12243648 2.07E-77 wgd
Bpe08g00988 Bpe-Chr8:12243648 Bpe09g00264 Bpe-Chr9:1940592 7.20E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g91 Blo03g00703 . . Bda09g00548 Bpe09g00264 Bpe08g00988 . Bma13g00925 Cmo16g00465 . . . Car01g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00727 . Bda12g00815 Bpe11g00442 . . Bma14g00272 . Cmo01g01308 . Cma04g00665 Cma16g00432 . . Cpe14g00364 Cpe01g00600 . . . . . . . . . . . . . . . Csa04g00814 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001260 3 5 3 5 4 1 3 2 1 2 2 2 3 2 2 2 2 0 3 2 2 2 2 2 2 2 2 5 3 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00988 Bpe_Chr08 FPKM 16.642788 18.340708 20.006748 19.865664 21.619955 20.497629 23.105627 24.014006 24.083363 25.697306