Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g00996 ATGGCTACCCGGAATGGCGAGCAATCCATTGACGCGCAGCTCCGTCTTCTCGTTCCGGCAAGAGTGAGCGAGGACGACAAATTGGTGGAGTACGATGCACTGCTTTTAGATCGGTTTCTTGATATTCTCCAGGACTTACATGGGGAGGATCTGAGGGAAACTGTTCAAGAATGTTATGAGCTTTCTGCAGAATATGAAGGGAAGCATGACCCAAAGAAACTCGAAGAGTTAGGAAGTGTGTTAACTAGTTTAGATCCAGGGGATTCCATTGTCATTGCTAAAGCTTTCTCGCATATGCTTAACCTGGCGAACTTGGCTGAGGAGGTCCAGATTGCTCATCGACGAAGGATAAAGTTAAAGAGAGGCGATTTCGCTGATGAGAACTCTGCAACTACTGAATCAGACATTGAAGAAACTCTCAAGAAACTTGTGGGTGAAATGAAAAAGTCCCCTCAAGAAGTTTTTGATGCTCTGAAAAACCAGACTATTGATCTCGTTTTGACTGCTCATCCTACTCAATCAGTTCGTAGATCTTTGCTTCAGAAGCATGCAAGGATAAGGGAGTGTTTAGTTCAGTTGTGTGCAAAAGACATCACTCCAGATGATAAGCAAGAAATTGATGAGGCTCTCCAAAGAGAGATTCAGGCTGCATTTCGCACAGATGAAATCCGAAGAACCCCTCCTACCCCACAAGATGAGATGAGAGCAGGAATGAGCTACTTCCACGAAACAATATGGAAGGGTGTGCCAAAATTCCTACGTCGTGTTGACACTGCTCTAAAAAATATAGGAATCAACGAACGGGTTCCATATAATGCTCCACTTATTCAGTTTTCATCTTGGATGGGTGGTGATCGTGATGGTAATCCACGGGTAACACCAGAAGTCACGAGGGACGTTTGTTTACTGGCGAGAATGATGGCTGCAAATCTGTACTATTCCCAGATTGAAGATCTTTTGTTTGAGTTGTCCATGTGGCGTTGCAACGAAGAGCTTCGTGATCAAGCAAACATTCTCCACAGGTCTTCCAAGAGAGATGCAAAGCACTTCATAGAATTTTGGAAGCAAATTCCTGCTAACGAACCTTATCGAGTGATTCTTGGTGATGTGAGAGACAAACTTTATCAGACTCGTGAGCGTAGCCGCAATTTGTTATCCCATGGCTATTCTGACATTCCAGAGGATGCAACTTTCATCAATGTCGATGAGTTGTTAGAACCTCTAGAACTCTGTTACCGATCTCTGTGTTCTTGTGGCGATCGTGCAATTGCCGATGGAACTCTTCTTGATTTTCTGAGACAAGTTTCTACTTTTGGCCTCTCCCTTGTGAGACTTGATATTAGGCAAGAATCAGACCGTCACACTGATGTATTGGACGCGATTACCAAGCATTTGGAGCTCGGCTCCTATCGAGAGTGGTCAGAAGAACGCCGACAAGAATGGCTTTTGTCTGAACTTGGTGGAAAACGTCCACTTTTCGGCCAAGATCTACCCACAACTGAAGAAATCTCTGACGTTTTAAACACATTTCACGTTATTGCAGAGCTTCCATCAGATAATTTTGGCGCCTACATTATCTCCATGGCCACAGCTCCATCTGATGTGCTTGCTGTAGAGCTTTTGCAACGGGAATGCCACGTAAAACAGCCATTGAGAGTTGTTCCACTCTTTGAGAAGCTTGCCGATTTGGAGGCTGCACCTGCAGCTTTAGCCCGCCTCTTTTCGATCGATTGGTACAAAAACAGAATCAATGGCAAGCAAGAGGTCATGATCGGATACTCAGATTCAGGAAAAGATGCAGGTCGTCTGTCTGCAGCCTGGCAATTGTATAAAGCACAAGAAGAACTGATAAATGTGGCAAAGACATATGGTGTGAAGTTAACCATGTTTCACGGCCGAGGTGGGACCGTTGGAAGAGGAGGGGGACCTACCCATCTGGCTATATTGTCTCAGCCACCTGATACAGTTCACGGGTCACTTCGCGTGACTGTTCAAGGTGAAGTTATTGAGCAGAGTTTTGGTGAAGAGCACTTGTGCTTTAGAACACTCCAGCGATTTACAGCTGCTACTTTAGAGCACGGAATGCATCCTCCCGTTTCGCCTAAGCCTGAGTGGCGCTCACTTATGGACGAAATGGCCATTGTTGCTACAGAGGAATATCGCTCAATCGTCTTCAATGAACCTCGCTTTGTCGAGTATTTCCGCCTCGCCACACCAGAGCTAGAGTATGGTCGGATGAACATTGGAAGCAGGCCGTCGAAGAGAAAGCCCAGTGGAGGAATAGAATCGCTCAGGGCAATTCCCTGGATCTTTGCTTGGACACAAACAAGGTTTCATCTTCCAGTCTGGCTCGGCTTTGGAATAGCATTCAAACATGTAATTCAAAAGGACATTAGAAATCTGAATATGCTTCAAGAGATGTACAATGAGTGGCCATTCTTTAGAGTCACCATTGATTTGGTGGAGATGGTATTTGCAAAAGGAAATCCCGGCATTGCCGCTCTCTACGACAAGCTTTTAGTTTCAGAGGATCTCTGGTCGTTCGGAGAGCATTTGAGAATCAACTTCGAAGAAACAAAGAGCCTCCTTCTACAGATAGCTGGCCACAAAGATCTCCTAGAAGGCGATCCATACTTGAAGCAGAGACTACGACTCCGAGATTCGTACATAACAACTCTCAACGTAAGCCAAGCCTATACTTTGAAACAAATCCGCGACCCAAATTATAGCGTGAGGGCTCAGCCCCTAATTTCCAAGGAAATTATGGAAGTGAGCAAACCGGGAGATGAGCTGGTGAAACTGAACCCACAGAGTGAGTACGCACCGGGTCTGGAAGACACTTTGATCTTGACCATGAAGGGTATTGCTGCTGGGCTGCAGAACACTGGTTGA 2892 45.57 MATRNGEQSIDAQLRLLVPARVSEDDKLVEYDALLLDRFLDILQDLHGEDLRETVQECYELSAEYEGKHDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAHRRRIKLKRGDFADENSATTESDIEETLKKLVGEMKKSPQEVFDALKNQTIDLVLTAHPTQSVRRSLLQKHARIRECLVQLCAKDITPDDKQEIDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLLFELSMWRCNEELRDQANILHRSSKRDAKHFIEFWKQIPANEPYRVILGDVRDKLYQTRERSRNLLSHGYSDIPEDATFINVDELLEPLELCYRSLCSCGDRAIADGTLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLELGSYREWSEERRQEWLLSELGGKRPLFGQDLPTTEEISDVLNTFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAALARLFSIDWYKNRINGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELINVAKTYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTVHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRSLMDEMAIVATEEYRSIVFNEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGIAFKHVIQKDIRNLNMLQEMYNEWPFFRVTIDLVEMVFAKGNPGIAALYDKLLVSEDLWSFGEHLRINFEETKSLLLQIAGHKDLLEGDPYLKQRLRLRDSYITTLNVSQAYTLKQIRDPNYSVRAQPLISKEIMEVSKPGDELVKLNPQSEYAPGLEDTLILTMKGIAAGLQNTG 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12293073 12297968 - Bpe023121.1 Bpe08g00996 107872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g00996 963 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 589 601 IPR033129 -
Bpe08g00996 963 Hamap Phosphoenolpyruvate carboxylase [ppc]. 21 963 IPR022805 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 2 7 963 - -
Bpe08g00996 963 Pfam Phosphoenolpyruvate carboxylase 34 963 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PRINTS Phosphoenolpyruvate carboxylase signature 438 458 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PRINTS Phosphoenolpyruvate carboxylase signature 278 293 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PRINTS Phosphoenolpyruvate carboxylase signature 761 787 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PRINTS Phosphoenolpyruvate carboxylase signature 165 178 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PRINTS Phosphoenolpyruvate carboxylase signature 587 607 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PRINTS Phosphoenolpyruvate carboxylase signature 629 658 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PRINTS Phosphoenolpyruvate carboxylase signature 218 234 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 7 963 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bpe08g00996 963 Gene3D Phosphoenolpyruvate/pyruvate domain 306 441 - -
Bpe08g00996 963 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 31 963 IPR015813 GO:0003824
Bpe08g00996 963 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 166 177 IPR018129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g00996 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - csv:101208329 1771.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g00996 Bpe11g00450 CCT
Bpe03g00882 Bpe08g00996 CCT
Bpe08g00996 Bpe11g00450 ECH
Bpe08g00996 Bpe09g00274 BCT
Bpe08g00996 Bpe09g00257 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00996 Bpe-Chr8:12293073 Bpe11g00450 Bpe-Chr11:3503637 0 dispersed
Bpe08g00868 Bpe-Chr8:11055361 Bpe08g00996 Bpe-Chr8:12293073 2.65E-90 transposed
Bpe08g00996 Bpe-Chr8:12293073 Bpe09g00257 Bpe-Chr9:1883106 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
Vvi19g116 Blo03g00699 . . . Bpe09g00257 Bpe08g00996 . Bma13g00930 . . Cma01g01246 Cma09g00817 Car01g01067 Car09g00734 Sed05g2521 Cpe06g00652 . Bhi09g03506 Tan01g4327 Cmetu07g1552 . . Mch11g1013 . Cla11g01713 Cam11g1782 Cec11g1803 Cco11g1808 Clacu11g1941 Cmu11g1752 Cre11g2160 . . . . Lsi04g02015 . . . . . . . Bpe11g00450 . . Bma14g00266 . Cmo01g01301 Cmo09g00812 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000971 4 3 4 5 4 1 3 2 1 2 2 2 4 2 1 4 2 4 4 2 2 2 2 2 2 2 2 5 3 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g00996 Bpe_Chr08 FPKM 7.400233 8.276909 8.575552 8.122747 6.942901 6.861043 7.1738 8.961167 8.970998 9.12626