Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01000 ATGGGTCGACCTCCGAATAATGGAGGCCCTGCTTTCCGCTTCACGCCCGCTGAGGTTATGGAGATGGAAACTATTTTGCAAGTTCATAATAACACAATGCCATCACGAGAAGTTCTAGTAAGCATTGCGGAGAAGTTCAGCGAGACGGAGGATCGAAAAGGCAAAATTACTGTACAAATGAAACAAATTTGGAATTGGTTCCAAAATAGGAGATACGCAATTAGGGCAAAATCAAGTAAAGCTCCTGGAAAGTTAAGCGTGTCTCCTTTGCCACGTGATGATTCACCGTCAGTGAGAAACGCAACTCAACCTGTAGCTGTGCCTGTGCCTGTGCCTGCTCCTTCAGGTGTAGGAAGGAGTTCCGTCGAAACTTCTGTCATGGAGTTCGAGGCAAAATCTGGCAGGGATGGTGCATGGTACGATGTTGCCACCTTTTTGTCCCACAGATATTTGGAGACAGGTGATCCGGAAGCACTTGTCAGATTTGCTGGTTTTGGACCAGAGGAGGATGAATGGATTAACATTAGGAAGCACGTGAGGCCTCGATCTCTTCCGTGTGAATCATCAGAATGCGTTGCTGTTATTCCTGGCGATCTAATTCTCTGCTTTCAGGAAGGTAAAGAGCAGGCCCTTTACTTTGATGCTCACGTTCTTGATGCACAAAGGCGGAGGCACGATGTTAGAGGCTGTCGTTGTAGGTTCTTGGTGCGATATGACCATGATCAATCTGAGGAAATTGTGCCACTGAGAAAGGTCTGTCGTCGGCCGGAAACTGATTATCGACTACAGCAGCTCCATGCAGTGAACCAAATGGTCACTTCCGATCAACAAAAGGCTACTGTTGAAACTACCATGATCAGCGGACCTTCTTCCAACATAATGCAGAAGCATATTGATCACGATGGAGGCGCTGTGGACCCCAGCCCATGCTTGAATGTTCCTGTATCTGCACAGAATCAAAACTCGGAGCCAAAGATGGCAGAACCCACAAGTGCTCCTGCTCCAATCGATGCAAATAAAATGAGATATTCGAGACTCTATAACTCCATAACCGAACACCCAAATTTGGGTTTCTGTCCGTTTCTTCTCTACTCAAAAACTGGCTTGAGATCGTTCGTCACCAGCTGCAGAGCCGTCGTCTTGCCGCGCTTCGGTGGGCCGGAAGTGCTCGAGCTCCGACCGGATGTCAGCGTCCCCGATCTTAAACCCAATGAAGTTCTTGTCAGGGCTCATGCCGTATCGATCAATCCGCTAGATACCAGAATGCGTTCGGGCTATGGTCGTTCCTTATTTCAACCTCTCCTGCCGCTCATTTTGGGGCGTGATATTAGTGGTGAAGTTGCAGGCATTGGATCTTCGGTAAACACCGTTCGCGTTGGACAAGATGTTTTTGGTGCATTGCATCCAACTGCTGTCAGGGGTACTTATGCTGACTATGCAATTCTTTCTGAAGATGAATTAACTTCGAAACCCGTATCTGTTTCCCATGTGGAGGCCAGCACCATTCCTTTTGCGGCATTGACTGCATGGCGTGGGTTGAAGGGCACTGCTAGAATAACTGAAGGGCAAAGGGTATTAGTAATTGGTGGTGGTGGAGCAGTGGGGTTCGCTGCCATTCAGCTTTCAGTAGCTTCTGGCTGCCAAGTAACAACTACTTGTGGAAGTCAAAGCATAGATCGAGTATTAGCAGCCAATGTTGAGCAGGCAGTTGACTACACTTCTGAGGATATTGAATTGGTTATAAGGGGGAAATTTGATGCGGTGTTGGATACTATTGGCGGTCCAGAGACAGAAAGAATAGGCATTAATTTCTTAAAGAGAGGTGGATACTATATGACCCTTCAGGGTGAAGCTGCATCATTGACTGATAGATATGGCCTTGCCATTGGACTTCCATTGTCAACTACTATTTTGCTGAAGAAACAGATCCAGTATCGCTATTCGCACGGAATAGAGTATTGCTGGACTTATATGAGGGCAGATTCAGAAGGTTTAAGTGAAATTAGAAAGCTGTGTGAGGCTGGAAAGCTTAAAATTCCAGTGGAGAAGACATTTCCTCTGTCTCAAGTGAGAGAAGCTCACGAGGCCAAGGACAAGAAACTTGTACCTGGTAAGGTGGTGCTTCAGATCGACTAG 2136 46.91 MGRPPNNGGPAFRFTPAEVMEMETILQVHNNTMPSREVLVSIAEKFSETEDRKGKITVQMKQIWNWFQNRRYAIRAKSSKAPGKLSVSPLPRDDSPSVRNATQPVAVPVPVPAPSGVGRSSVETSVMEFEAKSGRDGAWYDVATFLSHRYLETGDPEALVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVAVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAVNQMVTSDQQKATVETTMISGPSSNIMQKHIDHDGGAVDPSPCLNVPVSAQNQNSEPKMAEPTSAPAPIDANKMRYSRLYNSITEHPNLGFCPFLLYSKTGLRSFVTSCRAVVLPRFGGPEVLELRPDVSVPDLKPNEVLVRAHAVSINPLDTRMRSGYGRSLFQPLLPLILGRDISGEVAGIGSSVNTVRVGQDVFGALHPTAVRGTYADYAILSEDELTSKPVSVSHVEASTIPFAALTAWRGLKGTARITEGQRVLVIGGGGAVGFAAIQLSVASGCQVTTTCGSQSIDRVLAANVEQAVDYTSEDIELVIRGKFDAVLDTIGGPETERIGINFLKRGGYYMTLQGEAASLTDRYGLAIGLPLSTTILLKKQIQYRYSHGIEYCWTYMRADSEGLSEIRKLCEAGKLKIPVEKTFPLSQVREAHEAKDKKLVPGKVVLQID 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12336901 12346120 - Bpe023125.1 Bpe08g01000 107876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01000 711 CDD homeodomain 13 75 IPR001356 GO:0003677
Bpe08g01000 711 Pfam Zinc-binding dehydrogenase 567 708 - -
Bpe08g01000 711 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 494 685 IPR036291 -
Bpe08g01000 711 Gene3D - 124 185 - -
Bpe08g01000 711 Gene3D - 3 75 - -
Bpe08g01000 711 SUPERFAMILY GroES-like 376 531 IPR011032 -
Bpe08g01000 711 Pfam SAWADEE domain 127 253 IPR032001 GO:0003682
Bpe08g01000 711 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Bpe08g01000 711 SMART HOX_1 7 81 IPR001356 GO:0003677
Bpe08g01000 711 Pfam Alcohol dehydrogenase GroES-like domain 403 465 IPR013154 -
Bpe08g01000 711 Gene3D - 502 680 - -
Bpe08g01000 711 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 332 - -
Bpe08g01000 711 SUPERFAMILY Homeodomain-like 4 77 IPR009057 -
Bpe08g01000 711 Gene3D - 186 258 - -
Bpe08g01000 711 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 332 IPR039276 -
Bpe08g01000 711 CDD MDR_like_2 377 708 - -
Bpe08g01000 711 Gene3D - 383 708 - -
Bpe08g01000 711 SMART PKS_ER_names_mod 385 708 IPR020843 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01000 K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial - mnt:21395398 575.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01000 Bpe-Chr8:12336901 Bpe11g00448 Bpe-Chr11:3470847 7.17E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g157 . . . . . Bpe08g01000 . . Cmo16g00443 Cmo04g00593 . . . Car09g00555 . Cpe06g00484 . . . . . . . . . . . . . . . Cone6ag0175 Cone9ag0200 Cone14ag1044 Cone15ag1033 . . . . . . . . . . Bma07g01164 . . . Cmo09g00611 Cma04g00558 Cma16g00411 Car04g00528 Car16g00375 Cpe14g00345 Cpe01g00501 . . . . . . . Cla05g00992 Cam05g1083 Cec05g1091 Cco05g1085 Clacu05g1077 Cmu05g1027 Cre05g1101 . . Chy06g01172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010183 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21789 PF13602 ADH_zinc_N_2 9.50E-18 CL0063 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01000 Bpe_Chr08 FPKM 1.020325 0.806303 0.0 0.0 3.123862 2.03018 3.326405 6.026067 5.172714 6.389157