Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01005 ATGGAGTTTCAGAGGTCTCTCTCTCTCTTCTTCCTGGTTGTCTCTTCGATTTTTCTTTCTTCCTGTGAAGCTTACAAATTCTACGTTGGTGGGAATAATGGGTGGATCCTCAATCCTTCCGAGAATTATAATCTGTGGGCTGAAAGAAACAGGTTCCAAATCAACGACACTCTCTTTTTTAAGTATGAACGAGGATCGGATTCTGTTCTGGTGGTGAGTAAGAAGGATTATGAGAATTGCTATACGAAGAATCCGATCATGAAACTTGATGATGGAGATTCTGAGTTTAAGTTAGACAGGTCTGGGCCGTTTTACTTCATAAGTGGAAAAGATGGAAACTGTGAAAGAGGTCAGAAATTGATCGTCGTTGTTTTAGCTTTGAGGAGTCCTCCGCCGCCGCCTTCTCCTGCTACACCGGCATCGTCTCCATTTCCTGCAGCTCCAGAGCCTTCAATGGCGGCTCCACCCAGTACTCCTCCGAGCTCGCCGTTTCCAGGTCCTCAAGCACCGTCTTCTGGTTCACCCTTGTCTCCATCTCCAACGTCTTCATCTCAATCGCCATCGTCAACGACTGGGCCGAGTTCGTCTCCATCGGAGTCTACACTATCTCCGCCACCATCTGGGTCGTCGACGTTGACTGTAATTCCCTCTGCAACATTGGTGTTAACCGCTGTGACAGTCATGGTTTGGACGTCCTCTAATGCTCTATAG 711 47.54 MEFQRSLSLFFLVVSSIFLSSCEAYKFYVGGNNGWILNPSENYNLWAERNRFQINDTLFFKYERGSDSVLVVSKKDYENCYTKNPIMKLDDGDSEFKLDRSGPFYFISGKDGNCERGQKLIVVVLALRSPPPPPSPATPASSPFPAAPEPSMAAPPSTPPSSPFPGPQAPSSGSPLSPSPTSSSQSPSSTTGPSSSPSESTLSPPPSGSSTLTVIPSATLVLTAVTVMVWTSSNAL 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12384876 12385666 - Bpe023130.1 Bpe08g01005 107881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01005 236 MobiDBLite consensus disorder prediction 175 211 - -
Bpe08g01005 236 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Bpe08g01005 236 PANTHER EARLY NODULIN-LIKE PROTEIN 2 1 147 - -
Bpe08g01005 236 CDD OsENODL1_like 25 125 IPR041846 -
Bpe08g01005 236 Gene3D - 23 128 IPR008972 -
Bpe08g01005 236 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Bpe08g01005 236 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055
Bpe08g01005 236 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055
Bpe08g01005 236 MobiDBLite consensus disorder prediction 131 174 - -
Bpe08g01005 236 MobiDBLite consensus disorder prediction 131 211 - -
Bpe08g01005 236 PANTHER BLUE COPPER PROTEIN 1 147 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01005 - - - mnt:21392925 188.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00545 Bpe-Chr7:11792725 Bpe08g01005 Bpe-Chr8:12384876 2.51E-49 dispersed
Bpe08g01005 Bpe-Chr8:12384876 Bpe14g00646 Bpe-Chr14:5254353 2.52E-48 dispersed
Bpe02g01264 Bpe-Chr2:16085611 Bpe08g01005 Bpe-Chr8:12384876 4.45E-30 transposed
Bpe11g00459 Bpe-Chr11:3570473 Bpe08g01005 Bpe-Chr8:12384876 1.90E-69 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe08g01005 . 5 146 Phytocyanin Superfamily AT5G53870 53.5 5.1e-39 158.7
Bpe08g01005 . 5 140 Phytocyanin Superfamily AT4G27520 54.7 6.0e-37 151.8
Bpe15g00551 . 465 575 Phytocyanin Superfamily AT3G18590 64.0 4.1e-40 161.4
Bpe15g00551 . 465 592 Phytocyanin Superfamily AT1G48940 61.5 9.8e-44 173.3
Bpe08g00893 . 390 531 Phytocyanin Superfamily AT1G64640 57.2 6.0e-39 157.5
Bpe02g01264 . 12 178 Phytocyanin Superfamily AT5G25090 51.1 2.6e-39 158.7
Bpe02g01264 . 13 173 Phytocyanin Superfamily AT2G25060 51.9 3.6e-41 164.9
Bpe02g01264 . 14 177 Phytocyanin Superfamily AT4G31840 51.8 4.1e-42 167.9
Bpe02g01443 BCT 43 189 Phytocyanin Superfamily AT5G15350 53.6 5.4e-47 184.1
Bpe14g00162 BCT 45 197 Phytocyanin Superfamily AT5G15350 51.9 3.1e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01005 Bpe_Chr08 FPKM 1.27896 2.252434 0.76793 0.0 1.968037 2.31988 1.057801 0.0 0.0 0.0