Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01011 ATGCCGTCAAGATTCAGAGAGTTGAGGAAAATTGGGAGATGGAAATACAAACTGGATTCTCCAACCCAACTGGTTAGATTCTTTCATGGCGATCCCATTTTGCAGAAACCACTTCCTCGTTGCCTTCTTCATTTTCTGAGACCAAGAAACACAAATTCTAAATTCATTACCGACGATTTTGATATTTCGTCTCTCTGGGTAGTTCAGAAATGCCGTTCGTTCCATTCAGCCGCTGGTTTAGACGATAAACCAGACGATCCATCCGCCATTTTCGTCCAAAACGTTCTTAAACACAGAAGGGAGAAGCCGCTGGAGGAGATCAAGCAAGCATTGGATCGATGTGCGCTCGCTCTGACCAATGATTTCGTTCTGAGCGTGCTCCGACGACATCGATCAGACTGGAAATTGGCTCTCGTCTTCTTCCGTTGGGTTTCCGAAAAAAATGGTTATTCCCCTGCATCCGAGGTTTACAACGAAATTCTCGACATTCTTGGAAAAATGCGGCGTTTCGATGAAGTAGCCGAGGTGTTCGACGAAATGTCTCAAAGAAAAGATGTTCTGAACGAGGAAACCTATGGGGTTTTACTCAACAGATTTGCAGCATCTCATAAGATCGAGGAAGCCATTGACATCTTCCACAAAAGAGGTGAATTTAAGATTAGCAGTAATCTCGTCGCATTTCAGAAACTTTTGATGTGGTTGTGCAGATATAAGCACGTAGAAGTTGCGGAAACATTATTTTACTCGAAACAACAAGAGTTTTCTTCAGATATAAAGACAAGAAACATAATCCTAAATGGTTGGTGCGTTTTGGGCAATTTACACGAAGCAAAGAGGTTTTGGAATGAAACGGTCAAATCTAAATGCAAGCCCGACATGTTTACTTACGGGACATTCATCAATGCATTGACTAAAAAGGGTAAAATAGGCGCAGCTTTGAAGTTGTTTAATGCCATGTGGGAAAAGGGTTTCAACCCAGACGTCGTAATCTGCAACTCCATCGTCTACGCACTTTGTTTCAAGAAGAGAATCCCAGAAGCTCTGCAAGTCTTCAAGGAAATGAACGAAAGAGGCTGTGCTTCGAATGTGGTTACCTACAACTGTTTAATCAAGCATCTCTGCAAGATTCAGAGATTCGAAAAGGTAGCGGAGCTTCTGGATGAAATGGAAGGGACAAAAGCGGGTTGTAGTCCAAACTCTCAAACTTTCGTTTACTTGCTTAAAGTGGCAAAAGAGCCAGAAGGAGTCGATGAAGTTTTACAGCGAATGGAGAGAAACGGGTGCAAAATGAGCAGTGATATGTATAATTTGTTGCTGAGATTGTACATGAAGTGGGATCGTCAAGATAAAGTGAAGATGGCTTGGGATCGGATGGTCGAAAACAACTTGGGACCCGATCAACGATCGTATACTGTTATGATTCACGGGTTTTGCGAGAAAGGAAGTCTGAAAGATGCTCTGTTTTATCACAGGGAGATGATAGCAAAAGGAATTCAGCCAGCGGAGAAAACTGAAATGTTGATTGATTCCCTGAAGATGAATTCTTCAAAATACTCTGAAGAGCGCATGACAGTGAAGAAGTATTTGACTACCGAGCTGGTTCATTGTCACGATTTTTACCCTTTTCAGAACAGAAGTTTAATTGTGTTGGTGAATGGAAATGAGTAG 1668 42.09 MPSRFRELRKIGRWKYKLDSPTQLVRFFHGDPILQKPLPRCLLHFLRPRNTNSKFITDDFDISSLWVVQKCRSFHSAAGLDDKPDDPSAIFVQNVLKHRREKPLEEIKQALDRCALALTNDFVLSVLRRHRSDWKLALVFFRWVSEKNGYSPASEVYNEILDILGKMRRFDEVAEVFDEMSQRKDVLNEETYGVLLNRFAASHKIEEAIDIFHKRGEFKISSNLVAFQKLLMWLCRYKHVEVAETLFYSKQQEFSSDIKTRNIILNGWCVLGNLHEAKRFWNETVKSKCKPDMFTYGTFINALTKKGKIGAALKLFNAMWEKGFNPDVVICNSIVYALCFKKRIPEALQVFKEMNERGCASNVVTYNCLIKHLCKIQRFEKVAELLDEMEGTKAGCSPNSQTFVYLLKVAKEPEGVDEVLQRMERNGCKMSSDMYNLLLRLYMKWDRQDKVKMAWDRMVENNLGPDQRSYTVMIHGFCEKGSLKDALFYHREMIAKGIQPAEKTEMLIDSLKMNSSKYSEERMTVKKYLTTELVHCHDFYPFQNRSLIVLVNGNE 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12409519 12414336 + Bpe026161 Bpe08g01011 107887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01011 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 392 IPR002885 -
Bpe08g01011 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Bpe08g01011 555 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 63 524 - -
Bpe08g01011 555 TIGRFAM PPR: pentatricopeptide repeat domain 469 500 IPR002885 -
Bpe08g01011 555 TIGRFAM PPR: pentatricopeptide repeat domain 262 292 IPR002885 -
Bpe08g01011 555 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Bpe08g01011 555 TIGRFAM PPR: pentatricopeptide repeat domain 434 466 IPR002885 -
Bpe08g01011 555 TIGRFAM PPR: pentatricopeptide repeat domain 156 183 IPR002885 -
Bpe08g01011 555 TIGRFAM PPR: pentatricopeptide repeat domain 364 399 IPR002885 -
Bpe08g01011 555 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Bpe08g01011 555 Pfam PPR repeat 156 183 IPR002885 -
Bpe08g01011 555 SUPERFAMILY TPR-like 155 462 IPR011990 GO:0005515
Bpe08g01011 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Bpe08g01011 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Bpe08g01011 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Bpe08g01011 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Bpe08g01011 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Bpe08g01011 555 Pfam PPR repeat family 434 478 IPR002885 -
Bpe08g01011 555 Pfam PPR repeat family 257 304 IPR002885 -
Bpe08g01011 555 Pfam PPR repeat family 326 375 IPR002885 -
Bpe08g01011 555 Gene3D Tetratricopeptide repeat domain 320 393 IPR011990 GO:0005515
Bpe08g01011 555 Gene3D Tetratricopeptide repeat domain 88 249 IPR011990 GO:0005515
Bpe08g01011 555 Gene3D Tetratricopeptide repeat domain 250 319 IPR011990 GO:0005515
Bpe08g01011 555 Gene3D Tetratricopeptide repeat domain 394 536 IPR011990 GO:0005515
Bpe08g01011 555 PANTHER OS01G0151900 PROTEIN 63 524 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01011 - - - mcha:111010467 609.372
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00303 Bpe-Chr6:14355437 Bpe08g01011 Bpe-Chr8:12409519 1.08E-07 dispersed
Bpe08g01011 Bpe-Chr8:12409519 Bpe13g00790 Bpe-Chr13:14299629 1.17E-80 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g182 . Blo03g01555 . . . Bpe08g01011 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005725 1 10 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01011 Bpe_Chr08 FPKM 8.971216 8.635976 6.940027 7.646307 9.583158 6.985085 7.8975 9.195287 11.359498 10.358714