Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01021 ATGGCTTCTACTAATGCATTCCAAACTACTCCGACCAAAACCCTGACGGAAAAGTCACTATCCTTGCCCAGAAAACACCTTCTTCATCACCAGAACAGTCAGGGTTCTGAGTCCGTGGATTCGGGCGGGTTGAAGTCCAGATTTGAGGCATACAATCGTCTGCAAGCAGCTGCCGTTGCGTTCGGCGAGAAACTCCCTATACCTGAGATCGTAGCACTTGGTGGACAGTCTGATGGAAAGAGTTCGCTCCTTGAAGCCCTACTTGGGTTTCGCTTCAATGTTCGTGAGGTGGAGATGGGTACACGACGACCACTGATTCTCCAAATGGTTTACGACCCCACGGCTCTCGAACCGCGCTGTCGATTTCAGGAGGAGGATTCGGAGGAATATGGAAGATCAGTGGTTTTGGCTTCCGCAATTGCTGACGTTATTAAATCAAGAACTGAGGCGTTATTGAAGAAATCCAAAACTTCAGTTTCTTCTAAGCCAATTGTGATGAGGGCTGAGTATGCACATTGTCCCAATCTCACCATTATTGATACTCCTGGCTTTGTCCTTAAGGCTAAGAAGGGTGAACCAGAAAATACTCCTGAAGAAATTCTTTCGATGGTAAAGTCTTTGGCAAGTCCCCCAAACCGCATTCTTGTGTTCCTGCAACAGAGTAGTGTTGAGTGGTGCTCATCTTTGTGGTTGGATGCTATTCGTGAAATTGATCCAACATTTAGACGAACAGTAATTGTAGTCTCAAAATTCGATAATCGTATGAAGGGTACTCATTTTATGCAGGAGTTCAGTGATCGATGGGAAGTGGACCGATATTTAAGTGCAAGTGGTTACCTTGGAGATAATATTCGCCCATTTTTTGTTGCCTTGCCTAACGATAGGAATACTGTTTCAAATGATGAGTTCCGTCAACAAATTTCTCATGTTGACTCAGAAGTTCTGCGACATCTACGTGAGGGTGTTAAGGGAGGATTCGATGAAGAAAAATTCAGATCATGTATTGGTTTTGGGTGCTTGAAAGAATATTTAGAATCTGAGCTACAGAAAAGATACAAAGAAGCTGCCCCAGCAACTCTTGCCTTGCTTGAGCAGCGCTGCAATGAAGTTACTTGTGACTTAGTGAGAATGGAATCAAAGATACTGGCCAATTCTGACATTGGACATCTCAGGCGATCTGCAATGTCATATACTGCTTCTATTTGCAATCACGTGGGCGCCTTACTTGATGGAGCAGCAGATCCTGCACCAGAGCAATGGGGGAAAACTACTTTTGAGGAGCAATCAAGAAGCAGCATTGGAAATTGGCCCGGTGTAATTGCAGATGTGAAGCCTCCCAATGCCACTCTTAGATTGTATGGTGGTGCTGCTTTTGAAAGGGTAGCAAATATACTACTTGCTCATGCCAGCAGAGGTGGAAGCAGGGGTCTAACAGAAGCTGCTGCAGAGATTGCACGTGCTGCTGCTAGATCATGGCTTTCTCCTCTTCTTGACACAGCTTGTGATCGGCTTGCTTTTGTTTTGGAGAATCTATTTGATCTTGCTCTTGAAAGGAATGGTATTCATGACTTAGAATATGAAAGAAAGACAGGTACCATGGATGGCTATGTTGGTTTTCATGCCGCTTTGAGGCGGGTGTACAATCATTTCGTAAAGAATCTTGCCAAACAGTGCAAGCAACTTGCTAAGCACCATCTCCATTCTGTTACTAGTCCATATTCGCTAGTCTGTTACGAGAATGAATTTGGAGGATCTTATTTAAGCTCGGCATCTCTTCACAAATTCCCTCAAAATTCAGCTTTTTCATTTTGTTTAGAGTTATCTGATGAATCGGTGGCATCTCATGGTGAGACAAAGCATCAGGACAACATACCTACAGAAAAGAATCTGCAGCAAAACACGCCAGGCAAAGGTATAGAATCGAAAGACGTCTTAAGAGAGAGTGAATTGACAGTGCCCGAGACCCCGTCCCCTGATCAGCCTTGTGATGGTTTATATGGCGGGGCCAAGAAAGATCTTGGAAATATGGTGGACATTGGAGCAAAGAAACGGGCTTCAAGAATAATTGGAAATAACAGAAATTGTGATCGCACTAAGAGTCAAGATGGTGTTGGAGGCATATTCGGAAATGCAGATGGTCATTCAAGAACTACTTCAACTTACTCGCAAATTTGCTTATTAGCTGCACAGCATTTTTCCCGGATTCGTGAAGTTCTTGTGGAGCAAAGTGTTGCATCGACTCTGAACTCTGGATTCTTAACACCTTGCCGGGAAAAGCTTGTGGTAGAACTTGGCCTGGAGTTGTTTGCTGTCAATGATGAGAAATTCATGGACATGTTTGTTGCTCCCGGAGCCATTGACGTCCTTCAGAACGAACGACAATCCCTTCAAAAACGACAAAAAGTTTTGCAAACTTGCTTGAACGAGTTCAAAAGCATGGCTCGGTCCCTTTGA 2454 44.13 MASTNAFQTTPTKTLTEKSLSLPRKHLLHHQNSQGSESVDSGGLKSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVYDPTALEPRCRFQEEDSEEYGRSVVLASAIADVIKSRTEALLKKSKTSVSSKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPENTPEEILSMVKSLASPPNRILVFLQQSSVEWCSSLWLDAIREIDPTFRRTVIVVSKFDNRMKGTHFMQEFSDRWEVDRYLSASGYLGDNIRPFFVALPNDRNTVSNDEFRQQISHVDSEVLRHLREGVKGGFDEEKFRSCIGFGCLKEYLESELQKRYKEAAPATLALLEQRCNEVTCDLVRMESKILANSDIGHLRRSAMSYTASICNHVGALLDGAADPAPEQWGKTTFEEQSRSSIGNWPGVIADVKPPNATLRLYGGAAFERVANILLAHASRGGSRGLTEAAAEIARAAARSWLSPLLDTACDRLAFVLENLFDLALERNGIHDLEYERKTGTMDGYVGFHAALRRVYNHFVKNLAKQCKQLAKHHLHSVTSPYSLVCYENEFGGSYLSSASLHKFPQNSAFSFCLELSDESVASHGETKHQDNIPTEKNLQQNTPGKGIESKDVLRESELTVPETPSPDQPCDGLYGGAKKDLGNMVDIGAKKRASRIIGNNRNCDRTKSQDGVGGIFGNADGHSRTTSTYSQICLLAAQHFSRIREVLVEQSVASTLNSGFLTPCREKLVVELGLELFAVNDEKFMDMFVAPGAIDVLQNERQSLQKRQKVLQTCLNEFKSMARSL 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12474777 12479341 - Bpe023145.1 Bpe08g01021 107897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01021 817 Gene3D - 41 403 IPR027417 -
Bpe08g01021 817 PRINTS Dynamin signature 67 85 IPR022812 -
Bpe08g01021 817 PRINTS Dynamin signature 92 109 IPR022812 -
Bpe08g01021 817 PRINTS Dynamin signature 239 255 IPR022812 -
Bpe08g01021 817 PRINTS Dynamin signature 170 187 IPR022812 -
Bpe08g01021 817 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 64 357 IPR030381 GO:0005525
Bpe08g01021 817 SMART dynamin_3 44 272 IPR001401 GO:0003924|GO:0005525
Bpe08g01021 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 364 IPR027417 -
Bpe08g01021 817 CDD DLP_1 65 357 IPR001401 GO:0003924|GO:0005525
Bpe08g01021 817 Coils Coil 360 380 - -
Bpe08g01021 817 MobiDBLite consensus disorder prediction 614 642 - -
Bpe08g01021 817 Pfam Dynamin family 70 250 IPR045063 -
Bpe08g01021 817 PANTHER DYNAMIN-LIKE PROTEIN C 44 817 - -
Bpe08g01021 817 PANTHER DYNAMIN 44 817 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01021 - - - zju:107422425 1202.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01021 Bpe-Chr8:12474777 Bpe15g00103 Bpe-Chr15:9675401 4.07E-54 dispersed
Bpe08g01021 Bpe-Chr8:12474777 Bpe05g00697 Bpe-Chr5:20589179 2.78E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g204 . Blo03g01548 . . . Bpe08g01021 . . . . . . . . Sed06g0329 . Cpe02g00700 Bhi09g03433 Tan01g4390 Cmetu01g0301 . Hepe01g1389 Mch11g1066 . Cla11g01759 Cam11g1826 Cec11g1846 Cco11g1853 Clacu11g1986 . Cre11g2203 Cone6ag0150 Cone9ag0176 . . Lsi04g02069 Csa04g02340 Chy07g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01021 Bpe_Chr08 FPKM 0.0 1.265288 0.47156 0.0 2.703033 1.735824 1.197676 0.122694 0.0 0.0