Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01023 ATGGAGGGATCGTCTAATTCTAATTGGTGGAAGTCTGGAAGTAATAGAGGTTATGATTCTCTTCCAAGCGCATACGAGTTACCTCGTGATTCTGGGTCTGTAAGAGAGAGAGAAAGGGCTGTAATGGCTCCTCATGTTGATGTTCTTAGGCTAAACCATGATGGATTTTCCGAGGTTTGTGAAGATGGCGACCCGTCGAATGATCCTTGTAGCCTTTCAACTGCAAAGGGCGATATTAGCTTGAGAAATTGGTTGGACAAACCCGAGAGATCAGTCAATGCTTTTGAGTGTCTTCATATATTTCGGAAAATAGTCGAGATTGTTAACAAGGCACATTCTCAAGGAGTTGAGTTTCTCAATCCTCGTCCTTCATGTTTTCTGATGCCCTCTTTGGATCGCATTTCCTTCATCGGTTCAATGTCTGGGTCAGATTCTTTGGATGATGGATTAACAGACCAAACTATGGAGGTTAAAAATATCTCATCTATGATGCCAAAGAATCTAGCGAGTGAAGACTTTCAACCTCAGGTATTTTCAACAAAGGATTTATCAGAAACTTCTTCCGTGCAGTCAAGCTCCTTTCATTTAGCCCAAGTATCGTTAATAGAAGAGGCTGGAAAACAAAAAGATAAAGATAGAAAATATGTTGAATTCGCAGAAGAAAAGAAGGTGGCCTCTCCAATGAAGCAAATTTTAAGCATGGAGAGTAGTTGGTACACTAGCCCTGAAGAAGCTTCTGGCTCTTCAAGTGCATGTTCTTCAGATATCTATCGATTAGGAGTTCTTCTCTTTGAGTTATTCTGCCCCTTCGCCTCAAGGGAGGAAAAAAATAGAACCATGTCTAGTCTGAGACATCGAGTTCTTCCACCTCAATTACTGTCAAAGTGGCCCAAAGAAGCTTCATTTTGCTTATGGCTGCTGCACCCTGAACCAGACTGTCGACCAAAATTAAGTGAGTTGTTACAGAGCGAATTCCTTAATAAACGGAGAGATGACTTTGAAGAGTGTGAAGCAGCATTAAATCTTGGAGAAAGAATAGAGCAGCAGGAGTTGTTGCTAGAATTTCTTTTGCTTATACAGCAAAGGAAGCAAGAAGCTACCCATAAGTTGCAAGATACCATTTCTCTTCTTTACTCCGACATCGAGGACGTATTGAAGCAACTAAAGATTATTCACAAGAAGAACAGTGATTCCTCTACAGAGCTTGATAGTGAAAGTAATGATATATTTGATTCAGAGGCCAGGAAAAGATTCAAATCAAGTGTTCAAACGAGAGATGATGAAGTGTGCGATGAAAATCTTGATGGTAAAGACAAGTCGGAAATAATCGATGAAACTGCAGGAACAATTCATTCGAAAAGCTATCGTTTGAGGAATAATTTTAAGAAAATAGAGTCGGTATACTTTTTAATGCGAAGCAGACAGATCAACCAAATGAGAAAACAGTTGATTGGACCTTCACCGACGAGATGCGATGGAAGGGGCTCATCCATGGTCATGAATGAAAGAAGCTCGGCAACCGCTTCAGCCTCGAAGGTGTTGTCTTGCGGGCGACAAGGCGGGTGGATTAATGGGTTCCTGGATGGTTTATGCAAATATCTAACATTTAGTAAGCTAAGCATTAAGGCAGATTTAAAGCAAGGAGATTTATTAAATTCTTCTAATCTAGTGTCCACTCTTACATTTGATCGAGATGGGGATTTTTTCGCCACAGCTGGAGTAAATAAGAAAATAAAAGTATTTGAATATGAAGGGATTGTGAATAAAGATAATGATATTCATTATCCTATTGTTGAAATGGTAAGTAGATCAAAGCTGAGCAGTATTTGTTGGAACAGCTATATCAAGTGTCAAATTGCTTCAAGCAATTTTGAAGGTATTGTGCAGGTATGGGATGTTACAAGAAGTCAAGTACTAATCGAAATGCGAGAACATGACAAGCGTGTCTGGTCCGTTGATTTCTCATCAGCAGATCCGACCATTTTAGCCAGTGGCGGGGATGACGGTTCTGCAACGAGTGTTGGTACCATTAAAACGAAGGCCAATGTCTGTTGTGTTCAATTTCCGGCAGATTCAAGTCGGAGGCTTGCATTTGGCTCTGCAGACCATAAATTATACTATTATGATCTACGGAATGCAAAATTTCCCCTCTGCACATTTGTCGGGCACAATAAGACTGTGAGTTATGTCAAATTCATCGACTCATCGACTCTTGTTTCTTCTTCGACTGACAATACTCTAAGGCTATGGGATTTGTCCATGTGTCCATCTCCAATTGTCGACACTCCCGTCCAATTATACACCGGTCATATGAACATTAAGAACTTTGTTGGATTATCTGTCTCCAATGGTTTTATTGCCACTGGTTCAGAGACGAATGAGATTTACATCTATCACAAATCATTTCCAATGCCGGCCTTGTCGTACAAGTTTCAGACGAACCAACTTTCGAACCAAGATTTTGATGATGCTGTGCAGTTTGTCTCGTCTGTTTGTTGGCGTGGGAACTCATCGACACTAATTGCTGCAAATTCTACTGGTCATATCAAAGTCTTGGAGATGGTCTAA 2568 40.5 MEGSSNSNWWKSGSNRGYDSLPSAYELPRDSGSVRERERAVMAPHVDVLRLNHDGFSEVCEDGDPSNDPCSLSTAKGDISLRNWLDKPERSVNAFECLHIFRKIVEIVNKAHSQGVEFLNPRPSCFLMPSLDRISFIGSMSGSDSLDDGLTDQTMEVKNISSMMPKNLASEDFQPQVFSTKDLSETSSVQSSSFHLAQVSLIEEAGKQKDKDRKYVEFAEEKKVASPMKQILSMESSWYTSPEEASGSSSACSSDIYRLGVLLFELFCPFASREEKNRTMSSLRHRVLPPQLLSKWPKEASFCLWLLHPEPDCRPKLSELLQSEFLNKRRDDFEECEAALNLGERIEQQELLLEFLLLIQQRKQEATHKLQDTISLLYSDIEDVLKQLKIIHKKNSDSSTELDSESNDIFDSEARKRFKSSVQTRDDEVCDENLDGKDKSEIIDETAGTIHSKSYRLRNNFKKIESVYFLMRSRQINQMRKQLIGPSPTRCDGRGSSMVMNERSSATASASKVLSCGRQGGWINGFLDGLCKYLTFSKLSIKADLKQGDLLNSSNLVSTLTFDRDGDFFATAGVNKKIKVFEYEGIVNKDNDIHYPIVEMVSRSKLSSICWNSYIKCQIASSNFEGIVQVWDVTRSQVLIEMREHDKRVWSVDFSSADPTILASGGDDGSATSVGTIKTKANVCCVQFPADSSRRLAFGSADHKLYYYDLRNAKFPLCTFVGHNKTVSYVKFIDSSTLVSSSTDNTLRLWDLSMCPSPIVDTPVQLYTGHMNIKNFVGLSVSNGFIATGSETNEIYIYHKSFPMPALSYKFQTNQLSNQDFDDAVQFVSSVCWRGNSSTLIAANSTGHIKVLEMV 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12483240 12488510 - Bpe023147.1 Bpe08g01023 107899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01023 855 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 720 753 - -
Bpe08g01023 855 SUPERFAMILY Protein kinase-like (PK-like) 58 336 IPR011009 -
Bpe08g01023 855 Pfam WD domain, G-beta repeat 716 751 IPR001680 GO:0005515
Bpe08g01023 855 Pfam WD domain, G-beta repeat 639 670 IPR001680 GO:0005515
Bpe08g01023 855 Gene3D Transferase(Phosphotransferase) domain 1 78 336 - -
Bpe08g01023 855 PANTHER PROTEIN SPA1-RELATED 3 1 855 - -
Bpe08g01023 855 SMART WD40_4 593 632 IPR001680 GO:0005515
Bpe08g01023 855 SMART WD40_4 670 709 IPR001680 GO:0005515
Bpe08g01023 855 SMART WD40_4 760 799 IPR001680 GO:0005515
Bpe08g01023 855 SMART WD40_4 814 853 IPR001680 GO:0005515
Bpe08g01023 855 SMART WD40_4 547 582 IPR001680 GO:0005515
Bpe08g01023 855 SMART WD40_4 713 751 IPR001680 GO:0005515
Bpe08g01023 855 SMART WD40_4 635 669 IPR001680 GO:0005515
Bpe08g01023 855 PANTHER PROTEIN SPA1-RELATED 2 1 855 IPR044630 GO:0009640
Bpe08g01023 855 ProSiteProfiles Trp-Asp (WD) repeats profile. 720 753 IPR001680 GO:0005515
Bpe08g01023 855 ProSitePatterns Trp-Asp (WD) repeats signature. 738 752 IPR019775 -
Bpe08g01023 855 ProSiteProfiles Protein kinase domain profile. 1 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe08g01023 855 MobiDBLite consensus disorder prediction 1 19 - -
Bpe08g01023 855 MobiDBLite consensus disorder prediction 1 36 - -
Bpe08g01023 855 SUPERFAMILY WD40 repeat-like 551 852 IPR036322 GO:0005515
Bpe08g01023 855 SMART serkin_6 25 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe08g01023 855 Gene3D - 528 855 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01023 - - - qsu:111982906 1031.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01023 Bpe-Chr8:12483240 Bpe11g00642 Bpe-Chr11:4947340 6.64E-154 dispersed
Bpe11g00483 Bpe-Chr11:3718950 Bpe08g01023 Bpe-Chr8:12483240 0 wgd
Bpe08g01023 Bpe-Chr8:12483240 Bpe09g00233 Bpe-Chr9:1684408 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g217 . . Bda07g00298 . . Bpe08g01023 . . . . . . . Car09g00777 . . . Bhi09g02022 . . . . . . . . . . . . . . . . . Lsi04g02073 . . . . Blo10g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01023 Bpe_Chr08 FPKM 9.579166 10.726045 1.505353 0.84197 3.375465 3.47602 4.357817 0.178521 0.050431 0.085877