Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01042 ATGGAGAGCTTGAGCAGAAACTCATGTCTTCTTCTTCTTCCTCTTCTTCTTCTCTTTCTCTCTGGTTTGGTACAGATCCATGGTGGATCAGACTACGTGATCTGCTACAACAGAAAAAGTCCATGCCGTTTCAAATCGATTCGTTGCCCATCTCAATGTCCGTCTAAATCTCCTCCTAAATCGTCAAAATCTAAAGTCTGTTACGTCAACTGTAATAACCCCATTTGCAAAGCTGAATGCAAGAATCGGAAACCGAACTGCAATGGCCCTGGATCTGCATGCTTGGACCCTCGCTTCATCGGCGGAGATGGAATTGTCTTCTACTTCCATGGCAAGAAGAACCAGCATTTCAGCTTGGTTTCCGACAGGAATCTCCAAATCAATGGCCGTTTCATCGGACTCCGGCCTGCCGGACGAGCAAGGGACTTCACCTGGATCCAAGCTCTGGGCCTTCTCTTCGACTCTCACAGTTTCTCCGTCGAGGCCACTCCATCGGCGAAATGGGACGACGAGATCGATCACCTGAAATTTACTTATAACGACGTAGAGATAAATATTCCCGAAGGTCATCTTTCTTCATGGAAATCACCTCAGGATAATCTAAGAATCGAAAGAACATCCGACACGAACAGCGTGACTGTTACCCTGCCGGAAGTAGCTGAAATTTCTATAAATGTCGTGCCGGTGACGGAGGAAGACGATAGAATCCACAGCTATCAGATACCATCCGATAATTGCTTTGCTCACTTGGAGGTTCAGTTTAGGTTCTACGATCTTTCTTCAAAGGTTGAGGGAGTCCTGGGAAGAACATACAGGCCCGATTTCGAAAATCCGGCCAAACCAGGAGTGGCAATGCCGGTGGTCGGAGGTGAAAGCGAGTACAGAACGACGACCCTTTTATCCGCCGATTGTAAAGCTTGCGTTTTCTCATCGGAAGCTTTCGATGGAAAGGATTCATTGGAGATTACTAAAGGCTTCATGGATTGCAGCGAAGGAGCTTCCAGTGGAAATGGAATACTTTGCAGAAAATAA 1032 46.71 MESLSRNSCLLLLPLLLLFLSGLVQIHGGSDYVICYNRKSPCRFKSIRCPSQCPSKSPPKSSKSKVCYVNCNNPICKAECKNRKPNCNGPGSACLDPRFIGGDGIVFYFHGKKNQHFSLVSDRNLQINGRFIGLRPAGRARDFTWIQALGLLFDSHSFSVEATPSAKWDDEIDHLKFTYNDVEINIPEGHLSSWKSPQDNLRIERTSDTNSVTVTLPEVAEISINVVPVTEEDDRIHSYQIPSDNCFAHLEVQFRFYDLSSKVEGVLGRTYRPDFENPAKPGVAMPVVGGESEYRTTTLLSADCKACVFSSEAFDGKDSLEITKGFMDCSEGASSGNGILCRK 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12634191 12635353 - Bpe023166.1 Bpe08g01042 107918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01042 343 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) PROTEIN-LIKE PROTEIN 7 343 - -
Bpe08g01042 343 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 7 343 - -
Bpe08g01042 343 Pfam Root cap 253 309 IPR009646 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01042 - - - jre:108993162 491.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01042 Bpe-Chr8:12634191 Bpe11g00852 Bpe-Chr11:6317689 4.11E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g281 . . . . . Bpe08g01042 . . . . . . . . . . Cpe02g00721 . . . . . . . Cla11g01797 Cam11g1863 Cec11g1887 Cco11g1893 Clacu11g2026 Cmu11g1832 Cre11g2238 Cone6ag0118 . . . . . . . . . . . . . Bma07g01197 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011478 0 1 0 2 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01042 Bpe_Chr08 FPKM 1.636419 1.359699 7.472971 7.197912 26.776302 30.473297 27.893305 7.871541 6.166671 6.752956