Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01063 ATGGAGGCCATTCGAAAGCAGGCTACCAAGCTCAGAGAACATGTTGCGAAGCAACAGCAGGCGTTATTGAAACAATTAGGTCATTTTGGACATGAAATAAATTTGGTGGATGAAGCTGAGCTTCAGTGTCACCAACAACTTCAAAGCCTCTACAACTCCACTCGGGCTGCTAAGCATTTCCAGAGAAATATTGTTCGCGGTATCGGAGGTTTCACAGCAATAAGCTCAAAACAAATGGACATAGGTGATCTGTTCAGTAATATCTTTTCTTTTTCAGTGACAAGATTAGCTGAGGATTGTTCCAGATATGCTAATGATGATCTAAATGCTAATTCTTCCCTTGCAAGAGTTGCTTTGAGCGTTGGTACATCGCATAATTCAATGGAGAAGGAGAGGGAGACTTTACTTTTCACCCTAACTGAACAGGTCGCAGAGCCACTACGGTCACAAATAAAGGGGGCACCATTGGAAGATGCTCGACACTTGACTCATCGTTACGAAAAACTGAGGCAGGATGTAGAATCTCAGGTAGGTGAGGTATGGAGACGACAATCCAAGTTCAGAGATTCACCTATATCTTCTGAGAGCTCGATGAGGCTTCAAATGGCAGAGACAAGATTGAGTGAGCTTAAATCTATGATAATGGCATTAGGAAAAGAAGCAATTGCTGCTATGGTTGCAGTTGAAGATGAACAACAACAAGTCACTTTCCACAGACTTCTTACCATGGTGAAAGCAGAGAGATCTTATCATGAAAATGCTCTTGATATTTTAGAGAGGTTGAATGATGAGATGATTCTAACAACGCAATCAATTGGATCTTCATTTGAATCGTCGACTGTGCACGAAAATACATGTAATGAACCTGGACATGGGGACATTAAGCTGAAGGAATCCGATGCCAATGACAACATAAACAACAATAGAACCTACGTTATGGCAAAAGTTATCCACCCCTTCGAGGCTGGAGTAGATGGAGAATTAAGTCTATCCGTGGATGATTTCGTTGTGCTTCTCCAGGTTGGGTCCAATGGATGGTCAGAAGGAGAGTGCAATGGCAAGGTTGGATGGTTTCCATCTGCCTATGTTCAACTGCAGGAGAGCACTGAAGTGAAGGTTTAA 1122 42.42 MEAIRKQATKLREHVAKQQQALLKQLGHFGHEINLVDEAELQCHQQLQSLYNSTRAAKHFQRNIVRGIGGFTAISSKQMDIGDLFSNIFSFSVTRLAEDCSRYANDDLNANSSLARVALSVGTSHNSMEKERETLLFTLTEQVAEPLRSQIKGAPLEDARHLTHRYEKLRQDVESQVGEVWRRQSKFRDSPISSESSMRLQMAETRLSELKSMIMALGKEAIAAMVAVEDEQQQVTFHRLLTMVKAERSYHENALDILERLNDEMILTTQSIGSSFESSTVHENTCNEPGHGDIKLKESDANDNINNNRTYVMAKVIHPFEAGVDGELSLSVDDFVVLLQVGSNGWSEGECNGKVGWFPSAYVQLQESTEVKV 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12802020 12805615 + Bpe023188.1 Bpe08g01063 107939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01063 373 Gene3D SH3 Domains 296 372 - -
Bpe08g01063 373 Pfam Variant SH3 domain 316 364 IPR001452 GO:0005515
Bpe08g01063 373 Coils Coil 200 220 - -
Bpe08g01063 373 Gene3D Arfaptin homology (AH) domain/BAR domain 2 267 IPR027267 -
Bpe08g01063 373 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 2-LIKE ISOFORM X1 1 367 - -
Bpe08g01063 373 SUPERFAMILY BAR/IMD domain-like 42 265 IPR027267 -
Bpe08g01063 373 Coils Coil 1 21 - -
Bpe08g01063 373 ProSiteProfiles Src homology 3 (SH3) domain profile. 309 368 IPR001452 GO:0005515
Bpe08g01063 373 SMART SH3_2 312 367 IPR001452 GO:0005515
Bpe08g01063 373 PANTHER SH3 DOMAIN-CONTAINING 1 367 - -
Bpe08g01063 373 SUPERFAMILY SH3-domain 312 369 IPR036028 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01063 - - - qsu:112027004 431.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01063 Bpe-Chr8:12802020 Bpe11g01112 Bpe-Chr11:8317123 6.54E-88 dispersed
Bpe08g01063 Bpe-Chr8:12802020 Bpe07g00444 Bpe-Chr7:5860265 1.13E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g923 . . . . . . Bma07g01221 . . . . . . . . . Cpe02g00590 . . . . . . . . . . . . . . . . Cone6ag0875 Cone9ag0881 . . . . . . . Bda09g00465 Bpe08g01063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012200 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 0 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01063 Bpe_Chr08 FPKM 41.716747 46.299244 42.453449 40.428837 42.029202 43.010441 38.918037 84.47332 93.187691 89.803421