Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01064 ATGGCGGCATTCCTGCTCCTCCCCTCCAACACTTACCGCTTCTTCTACGCTCGACCTCGCCATCTTCCAACTCCGAACGACTCTCATCCTCTCCACCTCCCTTTTATTTCTGTGAAACCCCCTGGGAGCTTTCGTCGCCGCAGAATTACCTTGAATTCGGCGTGGCATTTGCCGGCGGAAACTACGGAAAAGGAACCTACTGCACTTGCAAATGCGTCGCTTCGGATCGCCGCCTCTGCTGTTCTCTTTCTTGCCGTTAGCTTTGGAGGAGTCGTCTTTGGAGTTCGTTCCTGCTCGGCAGCTTCCATACCTCGCCCTCCTACTTCTTCGGCCGATTCTTGCACTCTCGGCGACGATGCGAACATAGGCATAGCGGAAAATTCAGAAGAGAAAGAATTCGATGCTGCTTTTCAAGCATGGAAGTCCAAGTCGTTTGCTCTGACGGTTCCTTTAAGAATTGTAGCTCTTCGTGGATCTATTCCTCCTTCCTGGGTTAAGGATTTTATGCAATCACAAGGAAAGAGATTAAAACTTAATCTAAAGTACAATGGAGGTCTTGATGGCATCTTTTCTGAGCTATCTATGCCTATTGACACTAACAAGGTCGGACCCTCATCTGTTGTGGCTGCTGATGCTGTCACTATTGGTGATTCCTGGCTTAATATTGCTATAAAAAGTGCTTTAATTGAACCTTTGCAAGATTTAGAAGCACTGGAGTGGTTTAAAGGCTTAAGTGCCAAATGGAAGATGCTTTTATGCAGGAACTCTGAGGGGGAAGTGGATCCTGAAGGTAAAATATGGGCTGCTCCCTACCGTTGGGGTTGTATGGTGATAGCGTACAAAAAAAGTACATTTCAAAATAAGAACCTAGCTCCCATAGAGGACTGGGGAGATTTATGGAGACCTGAACTCAGAGGAAGGATTTCAATGGTTGATTCGCCTAGAGAAGTTATTGGAGCTGTTTTAAAATACATGGGAGCTTCCTACAACACAAACAACATCCACTTGAATGTAGATGGTGGCAGAGATGCTGTACTCCAAAACCTCACTTTGCTTGTAAAACAGGTTCGATTATTCGACAGTGTGCACTATCTAAAAGCATTTGGAGTTGGTGACGTATGGGTGGCTGTTGGGTGGAGTAGTGATGTTCTGCCTGTTGTCAAACGCATGTCCAATGTTGCAGTGGTAGTTCCCAAATCTGGGTCCAGCTTATGGGCTGATTTGTGGGAAAATCAACTGGTTGTTAAAACATCCAAAGCTATGATGAACTATGTTTCCCGCATAAAGTTTGAAATTTATTTTCCTGTTCTGCAGGCAATTCCTGCGACTGCTAGACTCGAGACAGACAAAATCGGAGGACGAGTAAGAGGGCCATCTCCTCTAGTCTACCAATGGATAGAATTTTGCTTGCAAACTGCTAGAGCAGTCCCGTTTAAGCAAGAGGTCATCCCGGGTGCTTCTCCTTCCTCACTTGAGAGTCCTCTAGTTGAAGAGGCCATTGCTTTCGCTAAGGGTAAACCACGCCTTGATACAAACCTTGTTAATGGGGTCCCACCGCCGGCTATCTTAGAAAGGTGCGAGTTCCTTGAGCCATTATCCGATTCCTCGTCGGAAGATTATAGGTGGTTGATCTCAAGCATTGGGAAACCGGAAAATAACTTGATGGTAAAAATATATCATTCAATTTCATCATTTATTCAATTGGTTTCGGGCAAAGTTGCATCCAAGAAAATGATCTGA 1740 45.34 MAAFLLLPSNTYRFFYARPRHLPTPNDSHPLHLPFISVKPPGSFRRRRITLNSAWHLPAETTEKEPTALANASLRIAASAVLFLAVSFGGVVFGVRSCSAASIPRPPTSSADSCTLGDDANIGIAENSEEKEFDAAFQAWKSKSFALTVPLRIVALRGSIPPSWVKDFMQSQGKRLKLNLKYNGGLDGIFSELSMPIDTNKVGPSSVVAADAVTIGDSWLNIAIKSALIEPLQDLEALEWFKGLSAKWKMLLCRNSEGEVDPEGKIWAAPYRWGCMVIAYKKSTFQNKNLAPIEDWGDLWRPELRGRISMVDSPREVIGAVLKYMGASYNTNNIHLNVDGGRDAVLQNLTLLVKQVRLFDSVHYLKAFGVGDVWVAVGWSSDVLPVVKRMSNVAVVVPKSGSSLWADLWENQLVVKTSKAMMNYVSRIKFEIYFPVLQAIPATARLETDKIGGRVRGPSPLVYQWIEFCLQTARAVPFKQEVIPGASPSSLESPLVEEAIAFAKGKPRLDTNLVNGVPPPAILERCEFLEPLSDSSSEDYRWLISSIGKPENNLMVKIYHSISSFIQLVSGKVASKKMI 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12806334 12809579 + Bpe023189.3 Bpe08g01064 107940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01064 579 CDD PBP2_PotD_PotF_like_1 150 545 - -
Bpe08g01064 579 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 63 556 - -
Bpe08g01064 579 PANTHER SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN 63 556 - -
Bpe08g01064 579 Gene3D - 275 432 - -
Bpe08g01064 579 Pfam Bacterial extracellular solute-binding protein 213 409 - -
Bpe08g01064 579 SUPERFAMILY Periplasmic binding protein-like II 151 409 - -
Bpe08g01064 579 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 265 281 IPR001188 GO:0015846|GO:0019808|GO:0042597
Bpe08g01064 579 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 312 331 IPR001188 GO:0015846|GO:0019808|GO:0042597
Bpe08g01064 579 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 294 308 IPR001188 GO:0015846|GO:0019808|GO:0042597
Bpe08g01064 579 PRINTS Bacterial periplasmic spermidine/putrescine-binding protein signature 398 417 IPR001188 GO:0015846|GO:0019808|GO:0042597
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01064 - - - csv:101211357 632.484
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g922 . . . . . . Bma07g01222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00464 Bpe08g01064 . . . . . . . . . . . Cpe06g00590 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009483 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01064 Bpe_Chr08 FPKM 0.015365 0.0 0.553083 0.182991 0.603496 0.798091 0.456505 0.013943 0.013979 0.011881