Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01100 ATGGCCGCTTGTATCCACTCTTCTAAAGCCAATCCGCTTTCCTACGATTCTAACTCTTCCCAATCCAATGATACTTCCTGCAAAATCATGAAATTTTGCCGACCTGCCTTTTCCGATTCTTTGTCTTGCATCCCAATTTGCCATAATCGGTCGAGGAACCTATGTACGAGTAAAATCAAGGAGGAGATTAATCGCGATTACGACGACGTCGATGCCGATCTTTGGCGGAGAATCCAAGAAGAAGCTCGGGTTGACGTGGAGCAGGAGCCGATTTTATCAGACTTCTATTGCGATTCCATCTTTTCGCACAATTCGTTGGAAAGTGCCCTAGCTAATCACCTAGCGATTAAATTGAGCAATTGCAGTCTTCCTCGGAACACCTTGTACGATCTGTTTCTCGAGGAATTGACGGAGGATGAAGAAATTTCTAGGGCAGTCAAGTATGATTTGAGAGCTGTGAAGGAGCGAGATCCAGCCTGCATAAGCTTCGTCCATTGTTTATTAAATTTCAAAGGCTTTCTGGCTGTTCAAGCGCATAGAGTTTCCCACAAATTATGGTCGCAAGGAAGAAAAGTCTTAGCCCACGTTATTCAAAACCGAGTGTCCGAGGTATTTGCCGTCGATATTCACCCCGGAGCAAAATTAGGAAGGGGTCTATTACTCGATCACGCCACCGGAGTCGTCGTCGGAGAGACGGCGATTATCGGAAACAATGTTTCAATTCTGCATAACGTGACTCTAGGAGGAACGGGCAAAGCTTCAGGAGACAGGCATCCGAAGATCGGCGACGGAGTTTTAATCGGGGCCGGAACTTGTATTTTGGGAAACATTAAGATCGGAGAAGGGGCGAAGATCGGCGCTGGGTCAGTGGTTTTGAAAGAAGTTCCACCAAGAACAACTGCAGTCGGAAATCCAGCAAGACTGGTGGGAGGAAAAGAGAATCCATTGAAGCTGGACAAAATCCCCAGTTTTACCATGGATCACACATCTTACATATGTGAGTGGTCTGACTATGTAATTTAA 1023 45.94 MAACIHSSKANPLSYDSNSSQSNDTSCKIMKFCRPAFSDSLSCIPICHNRSRNLCTSKIKEEINRDYDDVDADLWRRIQEEARVDVEQEPILSDFYCDSIFSHNSLESALANHLAIKLSNCSLPRNTLYDLFLEELTEDEEISRAVKYDLRAVKERDPACISFVHCLLNFKGFLAVQAHRVSHKLWSQGRKVLAHVIQNRVSEVFAVDIHPGAKLGRGLLLDHATGVVVGETAIIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGEGAKIGAGSVVLKEVPPRTTAVGNPARLVGGKENPLKLDKIPSFTMDHTSYICEWSDYVI 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13041603 13042625 + Bpe023224.1 Bpe08g01100 107976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01100 340 Pfam Serine acetyltransferase, N-terminal 74 178 IPR010493 GO:0005737|GO:0006535|GO:0009001
Bpe08g01100 340 PANTHER SERINE ACETYLTRANSFERASE 1 340 - -
Bpe08g01100 340 Gene3D Hexapeptide repeat proteins 208 326 - -
Bpe08g01100 340 Pfam Bacterial transferase hexapeptide (six repeats) 258 292 IPR001451 -
Bpe08g01100 340 CDD LbH_SAT 205 305 IPR045304 -
Bpe08g01100 340 SUPERFAMILY Trimeric LpxA-like enzymes 71 310 IPR011004 -
Bpe08g01100 340 SMART SATase_N_2_a 74 178 IPR010493 GO:0005737|GO:0006535|GO:0009001
Bpe08g01100 340 PANTHER SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC 1 340 - -
Bpe08g01100 340 TIGRFAM cysE: serine O-acetyltransferase 146 307 IPR005881 GO:0005737|GO:0006535|GO:0009001
Bpe08g01100 340 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 267 295 IPR018357 GO:0016740
Bpe08g01100 340 Gene3D serine acetyltransferase, domain 1 56 207 IPR042122 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01100 K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] - zju:107403319 486.878
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g01100 Bpe11g00576 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00585 Bpe-Chr1:3813933 Bpe08g01100 Bpe-Chr8:13041603 1.81E-131 dispersed
Bpe06g00157 Bpe-Chr6:2908058 Bpe08g01100 Bpe-Chr8:13041603 8.03E-100 transposed
Bpe11g00576 Bpe-Chr11:4410377 Bpe08g01100 Bpe-Chr8:13041603 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g635 Blo03g00516 Blo03g01477 Bda07g00397 Bda09g00422 . Bpe08g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00576 . Bma07g01254 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001381 4 9 3 1 3 1 3 2 2 1 1 1 2 3 2 3 1 6 3 2 2 2 1 2 2 2 2 3 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01100 Bpe_Chr08 FPKM 0.399306 0.0 0.294073 0.538911 0.0 0.0 0.0 1.676994 1.915573 1.720455