Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01119 AAGTTCAATATGCCTTCAGCTCAAGATCCATTCTACGTTGTGAAGGATGAAATCCAAGAATCTATTGATAAGTTGCAACAAACTTTTCACCGATGGGAGCTCGTTTCTGATTTAGGAGAGCGATCAAAACTTACAAATGAGCTGCTTGCTAGTTGTGATAGTATTGAGTGGCAGGTAGATGAATTGGACAAGGCTATAGCTGTTGCTGTCAGAGATCCGGCTTGGTATGGAATTGATGAAGTGGAGCTTGAAAAACGGAGGAGATGGACTAGTACAGCTCGTGCTCAGGTTGGCTCTGTGAAAAAGGTAGTGAAAACTGGGAAGGAGCTGAATGGTATTGGCAATACAACCACAAATATGAATGGAATACGTCGAGAACTGTTGAGACTGCCTAATTCTAATGAAAGAGACAGGGCCAACCAGTACGATGTTCAAGATAACGATGATTTCATAGCTTCAGAATCGGATCGGCAGTTGCTTCTCATTAAGCGACAAGATGAAGAATTGGATGAGCTCAGTGCCAGCGTGGAGAGAATTGGAGGAGTTGGGCTAACAATACATGATGAACTCCTTGCCCAGGAGAAAATTATCGATGAACTAGGAACGGAACTGGATAGTACATCAAATCGTCTTGACTTTGTTCAGAAAAAAGTAGCCGTGGTCATGAAGAAGGCTGGTCTTAAGGGGCAGATAATGATGATTGCGTTTTTAGTGGTTTTGTTCATAATTCTCTTTGTGCTGGTGTTTTTAACTTAG 756 42.06 KFNMPSAQDPFYVVKDEIQESIDKLQQTFHRWELVSDLGERSKLTNELLASCDSIEWQVDELDKAIAVAVRDPAWYGIDEVELEKRRRWTSTARAQVGSVKKVVKTGKELNGIGNTTTNMNGIRRELLRLPNSNERDRANQYDVQDNDDFIASESDRQLLLIKRQDEELDELSASVERIGGVGLTIHDELLAQEKIIDELGTELDSTSNRLDFVQKKVAVVMKKAGLKGQIMMIAFLVVLFIILFVLVFLT 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13172770 13175305 + Bpe023245.1 Bpe08g01119 107995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01119 251 Gene3D - 5 107 - -
Bpe08g01119 251 PANTHER SYNTAXIN PROTEIN 4 250 - -
Bpe08g01119 251 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 159 221 IPR000727 -
Bpe08g01119 251 Pfam SNARE domain 196 247 IPR000727 -
Bpe08g01119 251 CDD SNARE_Qc 162 219 - -
Bpe08g01119 251 Gene3D - 166 228 - -
Bpe08g01119 251 SUPERFAMILY SNARE fusion complex 158 221 - -
Bpe08g01119 251 Pfam Syntaxin 6, N-terminal 9 101 IPR015260 GO:0016020|GO:0048193
Bpe08g01119 251 Coils Coil 197 217 - -
Bpe08g01119 251 SMART tSNARE_6 154 221 IPR000727 -
Bpe08g01119 251 SUPERFAMILY t-snare proteins 8 102 IPR010989 GO:0016020|GO:0016192
Bpe08g01119 251 PANTHER SYNTAXIN 4 250 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00767 Bpe-Chr3:27690393 Bpe08g01119 Bpe-Chr8:13172770 1.46E-06 dispersed
Bpe08g01109 Bpe-Chr8:13125614 Bpe08g01119 Bpe-Chr8:13172770 4.29E-08 dispersed
Bpe11g00552 Bpe-Chr11:4234968 Bpe08g01119 Bpe-Chr8:13172770 1.99E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01119 K08500 - qsu:112025744 345.51