Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01122 GGGGGTTCTATAGTGGGGACTATCTTTGGAGCCATTAATGGACAGAGCAGGGGCTTGGGGTTCTTCAATGGCGCTGGAATAGGAGCCATTACAGGCGCATTTGTGGCCATCCAATTGCTTGAATCTGCTGTTGAAGGCCCTTCATTGTCCAAAGTTCATCTTTTAAGCAGCTTGATAAATGAAAACTCCTTCGTTGAATACTGGGTAAGTACCAGAATCCTCTGTGTTTTCCCCTATTTCTTCAAATTAAGCAGAAATTACGAATTGGAGGATGGACAGACGGCCAGAAGTCTACCAGAATGTGGCCATTTCTTCCACATAAACTGCATAGACAGATGGCTTCACTTGAGTGGCTCCTGCCCTACTTGTAGAAATATCATTCCTATTCATCTTTCAATAACTCCATCCACTTAA 414 43.72 GGSIVGTIFGAINGQSRGLGFFNGAGIGAITGAFVAIQLLESAVEGPSLSKVHLLSSLINENSFVEYWVSTRILCVFPYFFKLSRNYELEDGQTARSLPECGHFFHINCIDRWLHLSGSCPTCRNIIPIHLSITPST 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13183576 13184344 + Bpe023248.1 Bpe08g01122 107998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01122 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 127 IPR013083 -
Bpe08g01122 137 Pfam Ring finger domain 88 124 IPR001841 -
Bpe08g01122 137 ProSiteProfiles Zinc finger RING-type profile. 100 124 IPR001841 -
Bpe08g01122 137 SMART ring_2 75 123 IPR001841 -
Bpe08g01122 137 SUPERFAMILY RING/U-box 85 133 - -
Bpe08g01122 137 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 1 76 IPR044523 -
Bpe08g01122 137 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 88 126 IPR044523 -
Bpe08g01122 137 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 76 - -
Bpe08g01122 137 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 88 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01122 - - - cit:102609960 121.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01122 Bpe-Chr8:13183576 Bpe05g01005 Bpe-Chr5:22774800 8.12E-12 dispersed
Bpe08g01122 Bpe-Chr8:13183576 Bpe04g00929 Bpe-Chr4:6227824 2.64E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g512 . Blo03g01452 Bda07g00364 . . Bpe08g01122 . . . . . Cma09g00954 . Car09g00868 . . . Bhi09g01646 . . . Hepe01g1274 . . . . . . . . . . . . . . Csa07g01092 . . . . . . . . Bma07g01295 Bma14g00336 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014791 1 0 1 2 1 0 1 0 0 0 0 0 1 1 1 0 0 2 1 0 1 0 1 0 0 0 0 2 0 1 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01122 Bpe_Chr08 FPKM 0.0 0.0 0.88797 0.0 0.0 0.0 0.0 0.0 0.0 0.0