Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01139 ATGTGCCGCAAAGCCAGAAGTTTAAGCGCTCTCTTCCTTTCTGCTGTTGAAACTTCCAAAACTGCTGCAGATGCAGCCCTCAAAGGCTACATCTCCTCTATTGATCCATTATCTCCCAGCATCTCCCTTTCTGAAGCCATAACCCAACGCTCGCTGATGTCTTTTAAGTCTAAGGACTTTCCGAAGCTCCCTGACGATTTTCGGCGTTCGACCTTTGAGGAACCGGCGGCCTTGGATTCTGGTTGGTTATTTTTGTCTTTCGTAGTGTTCTGTTTATCTGTTGAGAAAATTTCATCGCAACCGATGGAGGATCTAAATTCTTGGAAAAATGTTTTAGCCATACCATGGTTTTCAAATATGTCAAATAGTGATCTATCTTCACATCGTAAAAAAATATCACGTGAAAGGAAAGGAAAGTGGATTTTCAAGAGCACGCAGAGCAATCGATTTAATAAATTAGTGGGGAACTGTGCTCAGAAGCTGGGGACAGGCACTACTATTGAGGTTCTTGGTAAATTAAGACGTGAAACTGGTGAGAAAGAGTACAGTGCTTTAATAGGAATCTGCATAGACAAGGCTAGGACAACTAATGATGTGGAGGTTATTCTAGAACAGATTTCTAATGTATTTTTTCTTACTACAACTATGAAAGAACAAGGTTTTAAGTTAGAAGACGAAACTTATGGGCCAGTACTCGTGTTTTTTATTGAAATGGACATGATGAAAGAGTTCCAATGTTTCTCTGAGCTTCTAAAAAATGGAAACCCAACTTCAGTTTCGAGGTTGGGTTACTATGAGATGTTGTTGTTCGTCAGAACCAATGATACAATGAAAGTTCATGAGCTCTGTAAGGATGTTTTAACCGAGGATGGGACAGATAGAACCAGTTTAAGAGAAAACTACATGTTAGCTCTATCTGAAAATGGTTGGAAGGAGGAGTTTTTGATGCTGTTGAATACTACAGACTTAAAGTTCTCATCAGTGGATTATGTTGCTTACATCTTTAAATCCTTTGGAAGGCTATCACTTGAAACTTTTGCGGAGAAACTCCTTTTGGAGTTCAAAACTAGCGAGCACGGAGAAGAGAATGTCTCAGACTTCATTCTTTGTTATGTTATTAGCATTCCAAATTTAGCGTTTGAGGATGCCATTTCAAAATTCAAGAACTTACATATCAAACTGGAGTTGAATCCATCATCTGCATCTTATGAGAAGCTCATCATCTTTTGCTGTGATTTTCTTGAGGTGCATTTGGCTCTTGATCTTGCAAAAGAAATGTGTGAAGCAGGTTTCATGCCCTCAGAGGATATGCTTCACTCCATTTTAGACGCCAGTGGGGAAAGTTATAACTTTAACTTGGTTCATCAAATCTATTTGATCATACGTAAATATGACTTAAAGCCAAATGGTGAAACCTTCAGGAGAATGATAAATTTGTGTGCGAGAATGAAAGATTTTGATGGTGCATATGACATGCTCAAGGATTTGGAGAAAATGAACTTGACTCCTACAAGTGGCATGTACAATGCTATAATGGCAGGTTATTATCGAGAGAAAAACATTCGTGGTGGACTGATGGTTCTGAAACAAATGGAACTTGCTCATGTAAAACCAGACTCTCAGACTTTCAGCTTGCTTCTCACCAACTGTAATCAAGAAGACGACATTAACAAGTATTATGAAGAACTGATGACTTCTGGAATTCAAGTTACTAAACAAATCTTCATGGCTCTTGTAAATGCATATGCGAATTGTGGACAGTTTGAGAAGGCAAAACAGATAATATTAAACAAGAGAATCCCAGTAAAGAACTTAAATGAATTGAAAAGTGTTCTTGTATATTCTCTCGCTTCATGTGGTCAAGTGGATGATGCTCTCGGTGTTTACAATGAAATCAAACAAGCTGGCTGCGTTGTTGAGCCTAAAGCAGTTATCAGCCTCATCGAGCACCTTCAAACTGATGGGGAATTAAGTATAATGCTTCAGCTCCTTGATGAGTTGAAGGATCCTCGTTACTGGATTGATGGTTGCAGTAGAGTTATTTTGTATTGTGTATTACATAAGCACTTAAGTTCGGCCATTGATCTTCTGAGGCAACTCAAGAACAATTTTTGCGAAGATGAGCATGGCAAGGAAAGAATTTATGATGAGGTCTGCTTTTGTCCTCTCCCCTTTGATGCTATAAAAAACTTTTTGAGTGATTTCTTTCTTTGCAATTTGCAGGTATTTTGTTTCATTGCAGAGTTAGACCCAACATATTTAGAGGTTGGCCTGGAATTGCTACGAGTTATCAAGTGTGAATTTGGTCTGTCTCCTCCTCGAAAATGTCTCGATTTTCTTCTCAGCGCTTGTGTCGGTGCCAAAGACTTGGAAAAGTCGCGATTGATTTGGAAGGAATATAAATCAGCTGGCCTCCCTTATAATGTTTTCAGCTTTTTAAGGATGTATCAAGCCCTCTTGGCATGCGGGGATCGTAAATCTGCAAAGATTTTGCTCGGTAAAATCCCAAAAAGCGACTCCCATGTTCGATGCATCATCAAACAATCTGAGGCAGTATATCTCAAAGGAAACAAGAAAAAGAAAACTGAAAAAAACCCGGAAATGAATCGATAA 2613 38.88 MCRKARSLSALFLSAVETSKTAADAALKGYISSIDPLSPSISLSEAITQRSLMSFKSKDFPKLPDDFRRSTFEEPAALDSGWLFLSFVVFCLSVEKISSQPMEDLNSWKNVLAIPWFSNMSNSDLSSHRKKISRERKGKWIFKSTQSNRFNKLVGNCAQKLGTGTTIEVLGKLRRETGEKEYSALIGICIDKARTTNDVEVILEQISNVFFLTTTMKEQGFKLEDETYGPVLVFFIEMDMMKEFQCFSELLKNGNPTSVSRLGYYEMLLFVRTNDTMKVHELCKDVLTEDGTDRTSLRENYMLALSENGWKEEFLMLLNTTDLKFSSVDYVAYIFKSFGRLSLETFAEKLLLEFKTSEHGEENVSDFILCYVISIPNLAFEDAISKFKNLHIKLELNPSSASYEKLIIFCCDFLEVHLALDLAKEMCEAGFMPSEDMLHSILDASGESYNFNLVHQIYLIIRKYDLKPNGETFRRMINLCARMKDFDGAYDMLKDLEKMNLTPTSGMYNAIMAGYYREKNIRGGLMVLKQMELAHVKPDSQTFSLLLTNCNQEDDINKYYEELMTSGIQVTKQIFMALVNAYANCGQFEKAKQIILNKRIPVKNLNELKSVLVYSLASCGQVDDALGVYNEIKQAGCVVEPKAVISLIEHLQTDGELSIMLQLLDELKDPRYWIDGCSRVILYCVLHKHLSSAIDLLRQLKNNFCEDEHGKERIYDEVCFCPLPFDAIKNFLSDFFLCNLQVFCFIAELDPTYLEVGLELLRVIKCEFGLSPPRKCLDFLLSACVGAKDLEKSRLIWKEYKSAGLPYNVFSFLRMYQALLACGDRKSAKILLGKIPKSDSHVRCIIKQSEAVYLKGNKKKKTEKNPEMNR 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13258024 13265223 + Bpe023265.3 Bpe08g01139 108015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01139 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Bpe08g01139 870 PANTHER OS02G0132600 PROTEIN 4 865 - -
Bpe08g01139 870 Pfam Pentacotripeptide-repeat region of PRORP 451 563 IPR033443 -
Bpe08g01139 870 Pfam PPR repeat 575 594 IPR002885 -
Bpe08g01139 870 Pfam PPR repeat 611 637 IPR002885 -
Bpe08g01139 870 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Bpe08g01139 870 TIGRFAM PPR: pentatricopeptide repeat domain 611 638 IPR002885 -
Bpe08g01139 870 TIGRFAM PPR: pentatricopeptide repeat domain 507 539 IPR002885 -
Bpe08g01139 870 Gene3D Tetratricopeptide repeat domain 447 561 IPR011990 GO:0005515
Bpe08g01139 870 Gene3D Tetratricopeptide repeat domain 562 709 IPR011990 GO:0005515
Bpe08g01139 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01139 - - - cmos:111445890 923.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01139 Bpe-Chr8:13258024 Bpe07g00773 Bpe-Chr7:14221602 7.97E-06 dispersed
Bpe08g01139 Bpe-Chr8:13258024 Bpe06g00223 Bpe-Chr6:11692563 3.29E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g434 . . . Bda09g00385 . Bpe08g01139 . . . . Cma01g01150 . . . . . Cpe02g00751 Bhi09g01943 . . . Hepe01g1308 . . . . . . . . . Cone6ag0086 . . . Lsi04g01240 . . . . . . . . . Bma07g01313 . . Cmo01g01202 . . . . Car16g00562 . . . . . . . . . Cla05g01536 Cam05g1643 Cec05g1649 Cco05g1687 Clacu05g1637 Cmu05g1532 Cre05g1642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006190 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 5 1 2 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01139 Bpe_Chr08 FPKM 0.0 0.0 0.482901 0.0 0.0 0.300337 0.0 0.840615 0.408508 0.513063