Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01142 ATGGTCTCCCCAGAACACACTAACTGGCTGTACGACTATGGAGTGATCGAAGATATCTCTGTCCACGATGGGAATTTCTCCGTTTCAAATTCCGGGTTTTCTTGGCCCGTACAGGCTTTGAATTGCTCATCTAATATCAGCATGGAAATTGATGGATCATTGACAAATTCAGATTGCCCCAAGGAATCAAGCTTGAAAAAGAGGGTTAGATCTGAATCAAGTTGCGTATCCAGCTCCAAAGCATGTCGGGAGAAGTTGCGGAGAGACAGGCTGAATGACAAGTTTCTGGAGTTGGGAGCTATTCTGGATCCTGGACAACCACCTAAAATAGACAAGGCTGCAATTTTGATCAACGCTGTCCGAGTGGTGACTCAATTAAAAGGTGAAGCCCAGAAGTTGAAGGACTCAAATTCAAGTCTTCAGGAGAGCATTAAAGAGTTGAAGGCCGAGAAAAGTGAGCTTCGAGACGAGAAGCAGAGGCTAAAGGCGGAAAAAGAGAAACTGGAGCTTCAATTGCAGAACATGAATGCTCCGCCCAGCTACCTCCCTCCACCACCCACAATTCCAGCTGCATTTGCTGCTCATGGCCAAGCTCCCTCCAGTAAGTTGGTGCCTTTCATTACCTACCCTGGAGTTGCCATGTGGCAGTTCATGCCTCGTGCTGCAGTGGACACCTCACAGGATCATGTTCTCCGCCCACCAGTTGCTTAA 711 47.68 MVSPEHTNWLYDYGVIEDISVHDGNFSVSNSGFSWPVQALNCSSNISMEIDGSLTNSDCPKESSLKKRVRSESSCVSSSKACREKLRRDRLNDKFLELGAILDPGQPPKIDKAAILINAVRVVTQLKGEAQKLKDSNSSLQESIKELKAEKSELRDEKQRLKAEKEKLELQLQNMNAPPSYLPPPPTIPAAFAAHGQAPSSKLVPFITYPGVAMWQFMPRAAVDTSQDHVLRPPVA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13277068 13279749 - Bpe023267.1 Bpe08g01142 108018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01142 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Bpe08g01142 236 CDD bHLH_AtILR3_like 80 155 - -
Bpe08g01142 236 Gene3D - 78 150 IPR036638 GO:0046983
Bpe08g01142 236 Coils Coil 123 178 - -
Bpe08g01142 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Bpe08g01142 236 PANTHER TRANSCRIPTION FACTOR ILR3 1 236 - -
Bpe08g01142 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 151 IPR036638 GO:0046983
Bpe08g01142 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bpe08g01142 236 SMART finulus 81 132 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe08g01142 Bpe11g00524 CCT
Bpe03g00805 Bpe08g01142 CCT
Bpe08g01142 Bpe11g00524 ECH
Bpe03g00805 Bpe08g01142 ECH
Bpe08g01142 Bpe09g00195 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00333 Bpe-Chr8:1978216 Bpe08g01142 Bpe-Chr8:13277068 2.03E-71 dispersed
Bpe08g01142 Bpe-Chr8:13277068 Bpe14g00694 Bpe-Chr14:5450124 8.31E-58 dispersed
Bpe07g00787 Bpe-Chr7:14297207 Bpe08g01142 Bpe-Chr8:13277068 2.46E-10 transposed
Bpe11g00524 Bpe-Chr11:4073329 Bpe08g01142 Bpe-Chr8:13277068 3.49E-99 wgd
Bpe03g00805 Bpe-Chr3:27979792 Bpe08g01142 Bpe-Chr8:13277068 2.93E-31 wgd
Bpe08g01142 Bpe-Chr8:13277068 Bpe09g00195 Bpe-Chr9:1381713 4.92E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21799 PF00010 HLH 1.80E-09 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01142 - - jre:109014401 330.872