Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01143 ATGACAACAGGCCTCTTCTTAGCTCGAGCAAGACTGACATTTCTGTTGGTATATACTTATCCTATCTCTTTCTGCTATACGATTGTTTTTCTTGTTATATTAACGAGAAAATTATTCAAAACTCGTTCTTTTTTAGGTGCTTTGCCGAATTCCTTTGCCTATGGCAGTTCAGTTAAAGATGGGAAATTGGAATTGCAGTCAAATATCTCAAAGTATTTTGATTGTAGTTGCCAAATTGAGTCGAATATTTGCACTGCAGTTCGAGATCTCGATTTGAATGAAGCCTCTGTATGTGTTGGTAGATCAAACATAGAATTTAATGAACAAGCAACGCCTACTTTGAAGCCCCCTCCTGGAAGAGTAAATGCTTCTTCTTTCAAGATTCCTAGTAAGGTTAGTCCTCCTCTGCCACCTCCTCAGGAACGACCTCCTCGTCAGCCTGCTGCACCATCTCCGCCTCAGCCTCAGCCTCAGCCTCCGGTACCTCCACCAGTGCCACCTCCTGGACCAACTGGGAAGGCTGATGCTCGCACTCCACCGCCGCTGCCGCCAAAAAGTGGCAGTGTTCCTCCCCATCCACCTCAACCGATCTCTCTGGGTTCTAATGCAGCTCAACCTTCAAAACCTCCATCAAATCCTGTGGAAAATGATTCAGACGCTCCCAAAGCCAAACTCAAGCCATTTTTCTGGGACAAAGTTCTAGCTAACCCTGGTCATTCAATGGTCTGGCATCAAATTAAGTCAGGATCATTCCAATTCAATGAAGAAATGATAGAAACTCTTTTCGGGTATACTCCTGTTGATAAAAACAAAAACAAACCGAAGAAAGACTCTTCTTCAAATGATCCTTCCACTCATTACATTCAGATCATTGATTCAAAAAAAGCACAAAATCTATCAATTCTTCTGCGGGCATTAAATGTGACAGAAGAAGAAATTTGCAATGCAGTTACGGAAGGGAATGAACTCCATGCTGAGCTTGTACATAATTTATTGAAAATGGCGCCAACGGCAGAAGAAGAACTGAAATTGAGGCTCTTCAATGGTGAAGTTTCTCAACTTAGTCTGGCCGATCGATTCTTGAAAGCCTTGGTTGACATCCCGTTTGCTTTCAAACAGTTGGAAGCTTTACATTTCATGTGCACTCTGCAGGAGGATTTGACCATTATTAAAGGGTCATTTACTTCGCTGGAGGTTGCCTGTCAAGAACTCAAAAACAGCAGGCTGTTTCTCAAACTCTTAGAAGCTGTTCTTAAAACTGGAAATCGTATGAACGATGGAACCTTTCGAGGAGGGGCGCAAGCTTTCAAACTCGACACCCTTTTAAAGTTATCGGATGTGAAAGGAACAGATGGGAAGACAACGCTCTTGCTGTTTGTTGTTCAGGAGATAATTCGCTCCGAAGGCATTCGAGCTGCTAGTTCTGGCACCAAATTGAATGACTCAATCGATGAAGCTTCTCTCAACTCAGAGGATCACTACAGAAGCCTTGGTCTCCAGGTCATATCAGGTCTGAGAAATGAGCTGGGGAACGTGAAGAGGGCAGCTGCTATCGATTTGGACAGCCTAAGAGGAACTGTAGCTAAACTCAGCAAGGATTTGGTAAAAACTCGAGAGTTTCTTAATGCTGCCGTGAAGAATATCAGCGAAAATAGTGGATTCTACCGAACATTGAAGAGCTTTGTGCAGAATGCTGAAGTTGATATTACAACGATAGTTGAAGAAGAAAATAGGATTAGGGATCTAGTAAAGCGGACAGGCAATTACTTCCATGGGAAAGCTGGAGAAGACGAGGTACAGCAATTGTTTCTCATAGTCAGTGAATTTTTGATAATGGTCGATAAAGCTTGTAAGCAAGTGAGAGCCTATAAAAACACATAA 1881 42.64 MTTGLFLARARLTFLLVYTYPISFCYTIVFLVILTRKLFKTRSFLGALPNSFAYGSSVKDGKLELQSNISKYFDCSCQIESNICTAVRDLDLNEASVCVGRSNIEFNEQATPTLKPPPGRVNASSFKIPSKVSPPLPPPQERPPRQPAAPSPPQPQPQPPVPPPVPPPGPTGKADARTPPPLPPKSGSVPPHPPQPISLGSNAAQPSKPPSNPVENDSDAPKAKLKPFFWDKVLANPGHSMVWHQIKSGSFQFNEEMIETLFGYTPVDKNKNKPKKDSSSNDPSTHYIQIIDSKKAQNLSILLRALNVTEEEICNAVTEGNELHAELVHNLLKMAPTAEEELKLRLFNGEVSQLSLADRFLKALVDIPFAFKQLEALHFMCTLQEDLTIIKGSFTSLEVACQELKNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLLFVVQEIIRSEGIRAASSGTKLNDSIDEASLNSEDHYRSLGLQVISGLRNELGNVKRAAAIDLDSLRGTVAKLSKDLVKTREFLNAAVKNISENSGFYRTLKSFVQNAEVDITTIVEEENRIRDLVKRTGNYFHGKAGEDEVQQLFLIVSEFLIMVDKACKQVRAYKNT 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13282155 13284326 + Bpe023268.1 Bpe08g01143 108019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01143 626 ProSiteProfiles Formin homology-2 (FH2) domain profile. 215 626 IPR015425 -
Bpe08g01143 626 PANTHER FORMIN-RELATED 152 623 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bpe08g01143 626 MobiDBLite consensus disorder prediction 131 197 - -
Bpe08g01143 626 SMART it6_source 215 626 IPR015425 -
Bpe08g01143 626 MobiDBLite consensus disorder prediction 266 285 - -
Bpe08g01143 626 Pfam Formin Homology 2 Domain 217 613 IPR015425 -
Bpe08g01143 626 MobiDBLite consensus disorder prediction 109 222 - -
Bpe08g01143 626 MobiDBLite consensus disorder prediction 198 214 - -
Bpe08g01143 626 PANTHER FORMIN-LIKE PROTEIN 3 152 623 - -
Bpe08g01143 626 Gene3D Formin, FH2 domain 220 626 IPR042201 -
Bpe08g01143 626 SUPERFAMILY Formin homology 2 domain (FH2 domain) 287 623 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01143 - - - jre:109014354 605.905
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g01143 Bpe11g00522 CCT
Bpe08g01143 Bpe11g00522 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01143 Bpe-Chr8:13282155 Bpe14g00693 Bpe-Chr14:5444870 1.44E-173 dispersed
Bpe11g00522 Bpe-Chr11:4059409 Bpe08g01143 Bpe-Chr8:13282155 0 wgd
Bpe07g00592 Bpe-Chr7:12464239 Bpe08g01143 Bpe-Chr8:13282155 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe10g00755 . 126 615 FH2 protein (formin) Gene Family AT3G25500 66.7 1.2e-170 597.4
Bpe15g00301 CCT 431 868 FH2 protein (formin) Gene Family AT3G25500 59.2 3.9e-132 469.5
Bpe13g00127 CCT 423 883 FH2 protein (formin) Gene Family AT3G25500 56.2 2.9e-127 453.4
Bpe05g00226 . 473 872 FH2 protein (formin) Gene Family AT3G25500 55.4 9.4e-110 395.2
Bpe10g00755 . 177 628 FH2 protein (formin) Gene Family AT2G43800 63.7 3.7e-147 519.2
Bpe15g00301 CCT 435 884 FH2 protein (formin) Gene Family AT2G43800 53.8 8.8e-125 444.9
Bpe13g00127 CCT 421 904 FH2 protein (formin) Gene Family AT2G43800 50.9 2.7e-118 423.3
Bpe07g00592 BCT 30 318 FH2 protein (formin) Gene Family AT4G15200 58.1 9.4e-62 234.6
Bpe14g00693 BCT 265 553 FH2 protein (formin) Gene Family AT4G15200 54.5 1.2e-56 217.6
Bpe11g00522 CCT,ECH 498 647 FH2 protein (formin) Gene Family AT4G15200 62.3 5.0e-47 185.7
Bpe08g01143 CCT,ECH 207 354 FH2 protein (formin) Gene Family AT4G15200 61.1 4.7e-45 179.1
Bpe11g00522 CCT,ECH 270 963 FH2 protein (formin) Gene Family AT5G54650 52.2 2.1e-166 583.2
Bpe07g00592 BCT 172 639 FH2 protein (formin) Gene Family AT5G54650 64.3 9.7e-164 574.3
Bpe14g00693 BCT 412 882 FH2 protein (formin) Gene Family AT5G54650 61.3 2.5e-151 533.1
Bpe08g01143 CCT,ECH 217 621 FH2 protein (formin) Gene Family AT5G54650 65.0 1.6e-145 513.8
Bpe05g00226 . 471 877 FH2 protein (formin) Gene Family AT5G54650 52.0 2.3e-109 393.7
Bpe15g00301 CCT 27 887 FH2 protein (formin) Gene Family AT5G67470 54.3 1.2e-219 760.0
Bpe13g00127 CCT 34 911 FH2 protein (formin) Gene Family AT5G67470 54.3 7.6e-201 697.6
Bpe11g01834 . 441 920 FH2 protein (formin) Gene Family AT5G67470 56.7 1.8e-133 473.8
Bpe10g00755 . 173 632 FH2 protein (formin) Gene Family AT5G67470 57.2 9.1e-130 461.5
Bpe05g00226 . 476 875 FH2 protein (formin) Gene Family AT5G67470 53.4 3.1e-109 393.3
Bpe10g00820 CCT,ECH 333 815 FH2 protein (formin) Gene Family AT1G59910 50.9 1.8e-120 430.6
Bpe11g01744 CCT,ECH 267 739 FH2 protein (formin) Gene Family AT1G59910 50.3 2.9e-118 423.3
Bpe13g00300 CCT 994 1304 FH2 protein (formin) Gene Family AT5G07650 75.6 1.3e-127 454.1
Bpe15g00594 CCT 1490 1809 FH2 protein (formin) Gene Family AT5G07650 72.2 2.5e-123 439.9
Bpe14g00599 . 1000 1332 FH2 protein (formin) Gene Family AT5G07650 58.2 2.3e-100 363.6
Bpe13g00300 CCT 918 1305 FH2 protein (formin) Gene Family AT5G07770 68.4 1.1e-139 493.8
Bpe15g00594 CCT 1414 1804 FH2 protein (formin) Gene Family AT5G07770 65.8 2.0e-133 473.0
Bpe14g00599 . 936 1345 FH2 protein (formin) Gene Family AT5G07770 53.6 1.2e-106 384.0
Bpe14g00599 . 930 1334 FH2 protein (formin) Gene Family AT3G32400 69.2 9.4e-153 537.0
Bpe13g00300 CCT 906 1307 FH2 protein (formin) Gene Family AT3G32400 63.7 1.1e-137 486.9
Bpe15g00594 CCT 1414 1809 FH2 protein (formin) Gene Family AT3G32400 64.3 1.1e-137 486.9
Bpe14g00599 . 1 1334 FH2 protein (formin) Gene Family AT2G25050 50.7 1.8e-303 1038.9
Bpe13g00300 CCT 919 1307 FH2 protein (formin) Gene Family AT5G07780 62.3 6.8e-121 431.0
Bpe15g00594 CCT 1415 1809 FH2 protein (formin) Gene Family AT5G07780 60.6 5.4e-118 421.4
Bpe14g00599 . 937 1332 FH2 protein (formin) Gene Family AT5G07780 51.1 2.1e-93 339.7
Bpe13g00300 CCT 1 1307 FH2 protein (formin) Gene Family AT5G07740 51.0 0.0e+00 1102.8
Bpe13g00300 CCT 993 1307 FH2 protein (formin) Gene Family AT5G07760 74.1 1.1e-124 444.5
Bpe15g00594 CCT 1489 1809 FH2 protein (formin) Gene Family AT5G07760 71.1 2.8e-120 429.9
Bpe14g00599 . 1011 1332 FH2 protein (formin) Gene Family AT5G07760 60.1 4.7e-99 359.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01143 Bpe_Chr08 FPKM 10.366291 10.780437 12.226617 12.099683 11.302321 11.171977 12.429333 11.771338 10.171373 11.543834