Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01148 GCAATGAAGTGCGCACTCTGCGGACGAAGGGCGATGATGTACTGCGAATCGGATCAAGCGAGCTTATGCTGTGACTGCGATGAGAAGGTTCACGGCGCTAATTTTCTCGTTGCGAAGCACCACCGGAGCCTTCTGTGCTACGCTTGTCAGTCTCTGACGCCGTGGACTGCTTCTGGACCCAAGCTCACGCCGACTGTGTCAGTGTGTGAGGGATGCGTCCATTCTCATCGAAGGAAGTGCGACCGCGGTACAGATCAGGAGAGCCAAGGCTGTAACGAGGTGGACGATGATGGCAGCTATGAAGTAAGTGAGAGCGAAGGAGGGTCTGAGGAAGAGGACGAGGATGGAGAAAATCAAGTCGTGCCCTGGTCTCATGCTTCTTCTCCGCCGCCGCCATCGCCCCCGGCGGGGAGTTTGAGCGGCGTAGGCTTTTCCTCTGGCGGAGGAGCGAAGAAGACGTTGAAGCGGAAGGGAGAAACCGGAGATGCTTCTGACTCCGATGACGAAATACGAAGCTCGTCTTCCCAACAGGGACGAGAAACGAGTGACGAATCATCTTCTCCAACCACCTTCCGATCGCGCAAGCATCTCCGGCCGACAATTGACTCAGACCAACTACCGACCAATCAAGATCTCAAAAAACATAGATCGACGGACATCATGAACTCAATCAACCGGCTCCAAACCACCATGGCTACCGACTGTAATAAAGCATCCAGGAAAACGATTCTTGGGATGAGCAATTTCAGCAGAGATCAAAGCCATTAA 768 53.65 AMKCALCGRRAMMYCESDQASLCCDCDEKVHGANFLVAKHHRSLLCYACQSLTPWTASGPKLTPTVSVCEGCVHSHRRKCDRGTDQESQGCNEVDDDGSYEVSESEGGSEEEDEDGENQVVPWSHASSPPPPSPPAGSLSGVGFSSGGGAKKTLKRKGETGDASDSDDEIRSSSSQQGRETSDESSSPTTFRSRKHLRPTIDSDQLPTNQDLKKHRSTDIMNSINRLQTTMATDCNKASRKTILGMSNFSRDQSH 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13311337 13312263 + Bpe023273.1 Bpe08g01148 108024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01148 255 MobiDBLite consensus disorder prediction 90 117 - -
Bpe08g01148 255 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Bpe08g01148 255 MobiDBLite consensus disorder prediction 152 174 - -
Bpe08g01148 255 PANTHER OS08G0178800 PROTEIN 3 219 - -
Bpe08g01148 255 MobiDBLite consensus disorder prediction 80 220 - -
Bpe08g01148 255 SMART bboxneu5 1 45 IPR000315 GO:0008270
Bpe08g01148 255 CDD Bbox1_BBX-like 3 45 - -
Bpe08g01148 255 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01148 - - - bhj:120086748 192.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01148 Bpe-Chr8:13311337 Bpe14g00696 Bpe-Chr14:5459494 1.42E-09 dispersed
Bpe11g00513 Bpe-Chr11:3964345 Bpe08g01148 Bpe-Chr8:13311337 6.57E-80 wgd
Bpe07g00585 Bpe-Chr7:12391957 Bpe08g01148 Bpe-Chr8:13311337 4.08E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g338 . . . . . Bpe08g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g01054 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01571 Cam05g1679 Cec05g1684 Cco05g1728 Clacu05g1670 Cmu05g1561 Cre05g1679 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21800 PF00643 zf-B_box 4.40E-05 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01148 Bpe_Chr08 FPKM 10.085181 10.682891 11.47368 12.28965 14.201474 14.356131 14.091695 8.627855 8.298824 8.6946