Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01190 ATGTCCGGGGAATCTTCCGATCCGAACTCGAGCAGTTCGATTTCTCCGTCCGGTTCTCCCACCTCTGCTGACTTCAACACAGATCAGCTTCCTTTCACTAGCCACACATCCAACAACTACGACGACGAAGAGGAGGCGGCGGTCGATCCTAATATTATTCTTGATGAGCCAAATGATGCTGAAGAAGAAGCCGAGGAGGACGGAGAGGATCTCTACAACGATAATTTTATGGACGATTACCGGAGGATGGAGGAACATGACCAATATGAATCCTTGGGTCTCAATGACTCTTTGGAAGACGAGAGAGATTTGGATCAAATTATGGAAGATCGAAGGGCTGCTGAATTGGAGCTCGACACACGAGATGGTCGCTCCACCCAGCGCAAACTGCCACAGCTACTTCATGATAATGACTCTGAGGATGACAACTCTAGGCCGCCAAAGAGAGCTAGAGCTTCTAGGCCTTCAGCTGCAGCAAGAAGTTACGATGATGTTGATGGAATGCGAAGTTCACCTGGAAGGTCACAGCAAGATCATTCTAGAGACGATATCCCCATGACTGATCATTCAATTGATGAACAGTATGAGGATGAAGATGACGATGAAGGTGAGTTTGAAATGTATAGGGTCCAAGGAACTCTAAGAGAGTGGGTAACTAGGGATGAAGTTCGTCGCTTCATTAGCAAGAAATTCAAAAATTTCTTAGAAACATATGTGAATCCAAAAAATGAACATTCTGAGCTTGTATACATGCGGCTCATAAATGAGATGGTGTTGGCTAACAGTAGTAGCTTGGAGGTAGATTATAAGCAGTTTATTTATGTACATCCAAATATTGCCATCTGGTTGGCTGATGCCCCGCAATCTGTTCTAGAAGTCATGGAAGAAGTTGCAATGAAGGTAGTATTTGACATACATCCTAATTACAAGAGTATTCACCAGAAGATCTATGTGAGGATAACCAACTTACCTGTATATGATCAGATTCGAAACATTAGGCAAATCCACTTGAATACCATGATTCGTATTGGAGGGGTCGTGACTCGCCGATCTGGTGTTTTTCCCCAGCTGCAGCAGGTCAAATATGATTGCAACAAATGTGGGGCAATATTAGGGCCCTTTTTCCAGAATTCATATTCAGAAGTGAAGGTTGGCTCTTGCCCTGAATGCCAATCAAAAGGGCCATTCACTGTTAATGTTGAACAGACTTTATACAGGAACTACCAGAAGCTTACGCTGCAAGAAAGCCCTGGTATTGTTCCTGCAGGTCGTCTTCCAAGATACAAGGAAGTGATATTGTTGAATGATCTGATTGATTGTGCCCGCCCTGGGGAAGAAATTGAAGTCACAGGAATTTATACAAATAACTTTGATTTATCTTTAAATACAAAGAATGGATTTCCTGTCTTTGCTACTGTTGTTGAAGCAAACTACGTTACCAAGAAGCAAGACCTCTTCTCTGCTTACAAACTTACTCAGGAAGACAAAGAAGAGATTGAAAAGCTTGCTAAAGATCCAAGAATTGGAGAAAGGATTATCAAATCTATTGCTCCATCAATATATGGCCATGAGGATATCAAAACGGCCATAGCTCTTTCTATGTTCGGTGGTCAAGAGAAGAATGTTGAAGGGAAACATCGGTTAAGAGGTGACATCAATGTACTTCTTCTTGGAGATCCAGGAACCGCGAAGTCACAATTTCTAAAATATGTTGAAAAGACTGGTCAAAGAGCAGTGTACACGACAGGCAAAGGAGCTTCTGCTGTTGGACTCACAGCAGCTGTGCACAAGGACCCAGTTACAAGGGAATGGACCCTTGAAGGAGGTGCCCTTGTTTTGGCTGATAAAGGAATTTGTCTTATTGACGAGTTTGACAAGATGAATGATCAAGATCGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGTATATCGAAGGCTGGGATAGTCACTTCTCTTCAGGCCCGTTGTGCTGTCATTGCTGCAGCTAATCCCATTGGAGGAAGATGGATTCTTGCACTTATTTTCAGGTACGATTCCTCAAAAACATTGACCCAGAATGTTGAGCTGACTGATCCTATCATTTCTCGTTTTGACATCCTATGTGTAGTGAAGGATGTTGTAGATCCTGTTGTAGACGAGATGCTTGCCAAGTTTGTTGTTGATAGTCATTTTAAATCACAGCCGAAGGGTTCTAATGTTGAAGATAAGTCCAATATTGAGGAGTCTCAGGATGACATTCAAGACTCTGATAGGCCAGTTGATGTTGAGGTGCTGCCCCAGGATGTGCTTAGAAAATATATAACTTATGCAAAGTTAAATATTTTTCCAAGGTTGCATGATGCTGATATGGATAAGCTCACACACGTTTATGCTGAGCTGCGGCGCGAATCATCTCACGGACAAGGAGTTCCAATTGCAGTGAGACACATAGAATCAATGATACGGATGTCCGAGGCGCATGCAAGAATGCACCTCAGGCAGCATGTTACACAAGAAGATGTGGATATGGCAATTCGAGTACTTCTTGATTCATTCATTTCAACACAAAAATTTGGGGTTCAGAAAGCACTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAAAAGGATTACAATGAACTACTCCTGCATCTCCTTCGTGAGCTCGTGAAGAATGCATTGCACTCGAAGGAAATAGTTTCTGGTTCTGTTGCCGGACTTACCCATATTGATGTGAAAGTAGAGGATTTGCAAACCAAGGCACAGGAACACGAAATATATGATCTTAATCCTTTTTTCTCAAGTACTCATTTTTCACGAGCCAACTTTACGTTGAACGAAGAACAGGGAGTAATTTACCATCGACTTGCAAGATAA 2865 42.37 MSGESSDPNSSSSISPSGSPTSADFNTDQLPFTSHTSNNYDDEEEAAVDPNIILDEPNDAEEEAEEDGEDLYNDNFMDDYRRMEEHDQYESLGLNDSLEDERDLDQIMEDRRAAELELDTRDGRSTQRKLPQLLHDNDSEDDNSRPPKRARASRPSAAARSYDDVDGMRSSPGRSQQDHSRDDIPMTDHSIDEQYEDEDDDEGEFEMYRVQGTLREWVTRDEVRRFISKKFKNFLETYVNPKNEHSELVYMRLINEMVLANSSSLEVDYKQFIYVHPNIAIWLADAPQSVLEVMEEVAMKVVFDIHPNYKSIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTLYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALSMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCAVIAAANPIGGRWILALIFRYDSSKTLTQNVELTDPIISRFDILCVVKDVVDPVVDEMLAKFVVDSHFKSQPKGSNVEDKSNIEESQDDIQDSDRPVDVEVLPQDVLRKYITYAKLNIFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLHLLRELVKNALHSKEIVSGSVAGLTHIDVKVEDLQTKAQEHEIYDLNPFFSSTHFSRANFTLNEEQGVIYHRLAR 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13594349 13599635 + Bpe023316.1 Bpe08g01190 108066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01190 954 SUPERFAMILY Nucleic acid-binding proteins 230 477 IPR012340 -
Bpe08g01190 954 MobiDBLite consensus disorder prediction 1 37 - -
Bpe08g01190 954 Gene3D - 356 406 - -
Bpe08g01190 954 MobiDBLite consensus disorder prediction 175 191 - -
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 661 673 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 637 650 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 549 564 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein family signature 609 623 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 338 355 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 396 410 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 457 468 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 472 483 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bpe08g01190 954 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 361 373 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bpe08g01190 954 Pfam MCM OB domain 328 455 IPR033762 -
Bpe08g01190 954 SMART mcm 325 849 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bpe08g01190 954 CDD MCM2 511 847 - -
Bpe08g01190 954 Pfam MCM AAA-lid domain 765 848 IPR041562 -
Bpe08g01190 954 ProSiteProfiles MCM family domain profile. 508 722 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g01190 954 MobiDBLite consensus disorder prediction 1 202 - -
Bpe08g01190 954 MobiDBLite consensus disorder prediction 43 73 - -
Bpe08g01190 954 Pfam Mini-chromosome maintenance protein 2 43 200 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Bpe08g01190 954 ProSitePatterns MCM family signature. 617 625 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bpe08g01190 954 Pfam MCM P-loop domain 496 726 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bpe08g01190 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 851 IPR027417 -
Bpe08g01190 954 MobiDBLite consensus disorder prediction 731 754 - -
Bpe08g01190 954 PANTHER DNA HELICASE 146 948 - -
Bpe08g01190 954 Gene3D - 488 871 IPR027417 -
Bpe08g01190 954 MobiDBLite consensus disorder prediction 74 149 - -
Bpe08g01190 954 Gene3D - 329 454 IPR012340 -
Bpe08g01190 954 MobiDBLite consensus disorder prediction 729 754 - -
Bpe08g01190 954 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 146 948 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bpe08g01190 954 Pfam MCM N-terminal domain 229 322 IPR027925 -
Bpe08g01190 954 Gene3D - 221 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01190 K02540 MCM2; DNA replication licensing factor MCM2 [EC:5.6.2.3] - vvi:100266163 1559.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01190 Bpe-Chr8:13594349 Bpe02g02150 Bpe-Chr2:22802576 4.16E-96 dispersed
Bpe08g01190 Bpe-Chr8:13594349 Bpe15g00852 Bpe-Chr15:18514200 1.42E-97 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01190 Bpe_Chr08 FPKM 0.245192 0.0 3.854781 3.609975 0.345954 0.271307 0.459996 3.902542 3.413186 3.953568