Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01208 ATGCATTCTGAATCTGAAACCAAAGATAAAGTAGAACCAAAAGCACATAACATCCCACCAGCCAATAGTTACGTTGAACCTTGGTGGCGTGCTGTTGAATACAATTCTATTCCCCCACCCTCGACTGTGGGTAATGCTCCCAACTCTTCTTCAATGGAATGCCTAGATAATTGTTCAGAGTCCAGTGATGACCGATCGATCTCTAATGATGAGCATATTGATGATGATGATGATGATGATGACAAACAATCACAACCAATGGCTAAATCTGCACTTTCTGAAAATGTCCAGCAAGATGCACCAAATGGACCACATGGAGCATCCTCCGGGACGACAGTGCATGGTGCCTGTGTGGCGCAACCTCCATCGCTTGAACTAGTTGGACATTCTATTGCATGTGCTCCGAATCCTTATCAGGATCCATATTATGGAGGAATGATGATGGCTTATGGACATCAACCGTTGAGTTACCCTCCTGTTCTTGGAATGCCGCATGCTAGAATGCCTTTACCTCATGACATGATACAAGAGCCAGTTTTTGTCAATGCCAAGCAATACCAAGGGATTTTAAGAAGAAGACAGGCTCGTGCTAAAGCTGAAGTTGAAAAGAAGCTGATAAAAAATAGGAAGGTAGACAATGTTTTCTTTCATGCAGAGAAATATACACTAGTAGTTGCATCTAACTTTGATCCTTTATTACAGCCATATCTTCATGAATCACGGCATAAGCATGCAATGCGTAGAGTAAGGAGTATCGGAGGGCGTTTTGCCAAGAAAATGGATGTCGGATCTGCCAACTGCACGAGCAAAGAAAAAGGAACAGACGGGTCCTCGCAGTCAGCTTGTACATCAGCTTCAGCTGCGGAACTCTCAGCTGCTGACGGGAGTGAAAGGTGGACGGCCACTAATGGTCAACAAGCCGCCAGCCGGCCCCAAAAATATGAATCCCAAAACATCATTAACCACCAAATTCAGAGTCACAATGGCTTTTTTGGTGAAAATGGGGAGGAAGGAGACTGCTCAGGCCAAGAACTGGGAAGAATTTCCCGGGACGAAGCTTCACACAGCCGGCGTCTAGCCATACAGTGA 1089 45.18 MHSESETKDKVEPKAHNIPPANSYVEPWWRAVEYNSIPPPSTVGNAPNSSSMECLDNCSESSDDRSISNDEHIDDDDDDDDKQSQPMAKSALSENVQQDAPNGPHGASSGTTVHGACVAQPPSLELVGHSIACAPNPYQDPYYGGMMMAYGHQPLSYPPVLGMPHARMPLPHDMIQEPVFVNAKQYQGILRRRQARAKAEVEKKLIKNRKVDNVFFHAEKYTLVVASNFDPLLQPYLHESRHKHAMRRVRSIGGRFAKKMDVGSANCTSKEKGTDGSSQSACTSASAAELSAADGSERWTATNGQQAASRPQKYESQNIINHQIQSHNGFFGENGEEGDCSGQELGRISRDEASHSRRLAIQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13749015 13751243 - Bpe023332.2 Bpe08g01208 108084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01208 362 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 234 351 - -
Bpe08g01208 362 Gene3D - 175 261 - -
Bpe08g01208 362 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 234 351 IPR001289 GO:0003700|GO:0006355
Bpe08g01208 362 MobiDBLite consensus disorder prediction 1 15 - -
Bpe08g01208 362 ProSiteProfiles NF-YA/HAP2 family profile. 175 259 IPR001289 GO:0003700|GO:0006355
Bpe08g01208 362 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 210 IPR001289 GO:0003700|GO:0006355
Bpe08g01208 362 SMART cbf3 174 259 IPR001289 GO:0003700|GO:0006355
Bpe08g01208 362 MobiDBLite consensus disorder prediction 293 313 - -
Bpe08g01208 362 MobiDBLite consensus disorder prediction 343 362 - -
Bpe08g01208 362 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 177 256 IPR001289 GO:0003700|GO:0006355
Bpe08g01208 362 MobiDBLite consensus disorder prediction 1 114 - -
Bpe08g01208 362 ProSitePatterns NF-YA/HAP2 subunit signature. 180 200 IPR018362 GO:0003677|GO:0016602
Bpe08g01208 362 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 32 210 - -
Bpe08g01208 362 MobiDBLite consensus disorder prediction 86 114 - -
Bpe08g01208 362 MobiDBLite consensus disorder prediction 328 362 - -
Bpe08g01208 362 MobiDBLite consensus disorder prediction 38 57 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe08g01208 Bpe11g00922 CCT
Bpe08g01208 Bpe08g00276 CCT
Bpe08g01208 Bpe11g00922 ECH
Bpe08g00276 Bpe08g01208 ECH
Bpe08g01208 Bpe08g00276 ECH
Bpe01g00318 Bpe08g01208 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00441 Bpe-Chr8:2786870 Bpe08g01208 Bpe-Chr8:13749015 9.47E-33 dispersed
Bpe01g00318 Bpe-Chr1:1970179 Bpe08g01208 Bpe-Chr8:13749015 9.40E-58 wgd
Bpe11g00922 Bpe-Chr11:6817660 Bpe08g01208 Bpe-Chr8:13749015 4.20E-123 wgd
Bpe04g01485 Bpe-Chr4:21385317 Bpe08g01208 Bpe-Chr8:13749015 1.37E-14 wgd
Bpe08g00276 Bpe-Chr8:1632726 Bpe08g01208 Bpe-Chr8:13749015 1.74E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21805 PF02045 CBFB_NFYA 1.60E-23 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01208 K08064 - zju:107412610 343.969