Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01222 ATGGGTTCCATGAATACAAATAATTGGCTTTCCTTCCCACTTTCACCAACTCACTCTTCTTTACCAATCCACCTCCAAGCTACTCAGCCCCATCAGTTCTCTCTAGGGCTAGTGAATGATTCAATGGAAAACCCATTTAACACCCAAGATTGGAACTTGATTACTAACCAAGGAGGAAATGAAGTTCCAAAGGTGGCTGATTTTCTTGGGGTTACCAAATCAGAAAATCAATCAGATCTAGCGGTTTATAATGAGATCCAGTCAAATGATTCAGACTATCTATATCCAAACAACAGCATAGTTCCTCTTCAAAACACCATGGCTGATTTCCAAGAAAGCTCTAGCCATTTGCAGTCCTTGACTTTGTCAATGGGGAGTGGAAATAAGGGTTCGGCAGCATGTGAAAATAGCGAAAACAGCACAAACAGCATTGTTGAGGCAACTCCGAGAAGAACTTTGGAGACTTTCGGGCAAAGAACTTCAATTTATCGCGGGGTTACAAGGCATAGATGGACTGGAAGATATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGTCAAGGTGGGTATGACAAAGAAGATAAAGCAGCCAGAGCTTATGATCTTGCTGCGCTGAAATATTGGGGAACGTCAACGACCACCAATTTCCCAGTGAACAATTATGAAAAAGAAGTGGAAGAGATGAAGCACATGACGAGACAAGAATTTGTAGCCTCCATTAGAAGGAAGAGTAGTGGCTTTTCTAGAGGTGCATCCATCATGTTCATCTGTGTTAACAGGCATCATCAGCATGGAAGATGGCAGGCGAGAATAGGAAGAGTTGCTGGAAACAAAGATCTTTACTTGGGAACGTTCAGTACCGAGGAAGAAGCTGCAGAAGCATATGATATTGCAGCCATAAAATTTCGAGGCCTAAATGCAGTGACGAACTTCGACATGAATCGGTACGACGTGAAGAGTATCTTGGAAAGCAATACTCTCCCCATCGGAGGAGGAGCAGCCAAAAGATTGAAGGAAGCTCAGGCCTTTGAATCAACTAGAAAACGTGAAGAAATGATTGCATTAGGTTCAAGCTTTAGCTATGGCGCCGCCGGTGGATCTTCAACTAGACTTCCTCTTCAATCTTACCCTCTTCTTCAGCAATCTTTTGAGCATTCTCAGCCCTTGATTTCTCTGCAAAATCAAGAAATCTCTCATTTTTCTCAAGACCCATCGTCGCTGCAGCAGAGTTATCTTCATCAGCTTCACTTTCATCATCAGAACTCTGGTTTTTATGCAAATCCATTTGGCCAAAGCTCTCAATTCTTCAATGGGTATGTTCAGAATAATCACCCGGGTTTACTTCACGGTTCTGGATCATCTTCGTCTGTAATCATGGACGATAATAACTATGGCGGAGGAATATATAATCTCGGAAATGGAGTGCCACTGGCGTCGGTTTCTTCCTCTAATGGCGGTGGAGGGAGATCTGCAGAAGAACTGGCTCTTGTTAAGGTGGATTATGATATGGTTCCTGGAGGCTATGGAGGTTGGTCCACTGATCATCAGGCTAGCAATGGAGTTTTCTCAATGTGGAATGATGGCTGA 1611 43.2 MGSMNTNNWLSFPLSPTHSSLPIHLQATQPHQFSLGLVNDSMENPFNTQDWNLITNQGGNEVPKVADFLGVTKSENQSDLAVYNEIQSNDSDYLYPNNSIVPLQNTMADFQESSSHLQSLTLSMGSGNKGSAACENSENSTNSIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPVNNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASIMFICVNRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAFESTRKREEMIALGSSFSYGAAGGSSTRLPLQSYPLLQQSFEHSQPLISLQNQEISHFSQDPSSLQQSYLHQLHFHHQNSGFYANPFGQSSQFFNGYVQNNHPGLLHGSGSSSSVIMDDNNYGGGIYNLGNGVPLASVSSSNGGGGRSAEELALVKVDYDMVPGGYGGWSTDHQASNGVFSMWNDG 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13820585 13823039 + Bpe023346.1 Bpe08g01222 108098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01222 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 534 - -
Bpe08g01222 536 CDD AP2 161 227 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 Gene3D AP2/ERF domain 262 322 IPR036955 GO:0003700|GO:0006355
Bpe08g01222 536 Gene3D AP2/ERF domain 162 227 IPR036955 GO:0003700|GO:0006355
Bpe08g01222 536 SUPERFAMILY DNA-binding domain 161 227 IPR016177 GO:0003677
Bpe08g01222 536 ProSiteProfiles AP2/ERF domain profile. 255 320 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 Pfam AP2 domain 264 312 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 Pfam AP2 domain 162 217 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 534 - -
Bpe08g01222 536 SUPERFAMILY DNA-binding domain 268 321 IPR016177 GO:0003677
Bpe08g01222 536 CDD AP2 268 320 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 SMART rav1_2 162 231 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 SMART rav1_2 266 326 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Bpe08g01222 536 ProSiteProfiles AP2/ERF domain profile. 162 225 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe08g01222 Bpe11g00910 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01222 Bpe-Chr8:13820585 Bpe15g00266 Bpe-Chr15:14018552 2.44E-84 dispersed
Bpe08g00699 Bpe-Chr8:8144067 Bpe08g01222 Bpe-Chr8:13820585 2.82E-09 transposed
Bpe11g01266 Bpe-Chr11:9463537 Bpe08g01222 Bpe-Chr8:13820585 3.16E-128 transposed
Bpe11g00910 Bpe-Chr11:6744803 Bpe08g01222 Bpe-Chr8:13820585 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21806 PF00847 AP2 1.60E-08 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01222 K09285 - pop:7478340 738.799