Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01243 ATGAAAACTTTCAGCCTTTCTGGTGGAGGTGGCTTTTGCAAGGAAGTGACTGCTGATTCTGAGTTACTAAGTTCAAGTGTAGATTCAAGAAATTCTACCCATGGAAAAATCATGAATAGATCGGTTGGATTGCCACCGGCTAATGCATTTCAGGAGCTGCTCGAGTGTCCTGTTTGCATGAACTTGATGTATCCTCCAATTTACCAGTGTTCAAACGGCCACACCCTATGCTCCAAATGCAAGACCAGAATTCAAAACTCTTGCCCGACTTGCCGCCATGAGCTCGGAAATATAAGATGTTTAGCTCTCGAAAAGATAGCAGAGTCTATGGAGGTTCCTTGCAGGTACCAACTATTTGGCTGTCAGGATGTATTTCCTTCATATAGTAAGCTCAAACACGAGAGTTGTTGTAAATATCGCCCATATAAGTGTCCCTATGCCGGAGAGGACTGCTCGGTCGCTGGAGATATTCCCTACCTTGTCTTGCACCTCAAGGACGACCACAAAGTTGATATGCACGATGGGTGTTCTTTCAACCACAGATATGTCAAATCCAATCCTAAGGAAGTTGATAATGCTACTTGGATGCTTACGGTTTTTAATTGCTTTGGCCATCAATTCTGTCTGCATTTCGAAGCTTTCCGGTTAGGAAAGGCACCGGTTTACATGGCATTCGTTCGATTCATGGGAGATGAGGACGAGGCAAAGCAATTCGGGTACAGCTTAGAAGTGGGTGGAAATGGCCGGAAACTTAGATGGGAGGGTGTTCCGAGGAGTATCAGAGATGGCCATAAGAGAGTCAGAGAAAGTCAAGATGGACTCATAGTTCAGAGGAATATGGCTCTCTTCTTCTCCGGCAGCCATAGCCATGACCTTAAGCTTAAAGTCTCTGGCCGTATATGGAGAGCAAGGTGA 915 45.25 MKTFSLSGGGGFCKEVTADSELLSSSVDSRNSTHGKIMNRSVGLPPANAFQELLECPVCMNLMYPPIYQCSNGHTLCSKCKTRIQNSCPTCRHELGNIRCLALEKIAESMEVPCRYQLFGCQDVFPSYSKLKHESCCKYRPYKCPYAGEDCSVAGDIPYLVLHLKDDHKVDMHDGCSFNHRYVKSNPKEVDNATWMLTVFNCFGHQFCLHFEAFRLGKAPVYMAFVRFMGDEDEAKQFGYSLEVGGNGRKLRWEGVPRSIRDGHKRVRESQDGLIVQRNMALFFSGSHSHDLKLKVSGRIWRAR 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13946624 13948396 + Bpe023368.1 Bpe08g01243 108119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01243 304 CDD RING-HC_SIAHs 54 92 - -
Bpe08g01243 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 298 IPR008974 GO:0005515
Bpe08g01243 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Bpe08g01243 304 SUPERFAMILY RING/U-box 50 97 - -
Bpe08g01243 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 8 303 - -
Bpe08g01243 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Bpe08g01243 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bpe08g01243 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 8 303 - -
Bpe08g01243 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Bpe08g01243 304 SUPERFAMILY TRAF domain-like 111 300 - -
Bpe08g01243 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01243 Bpe-Chr8:13946624 Bpe15g00979 Bpe-Chr15:19385499 9.82E-149 dispersed
Bpe11g01230 Bpe-Chr11:9190637 Bpe08g01243 Bpe-Chr8:13946624 4.73E-22 transposed
Bpe04g01449 Bpe-Chr4:21132475 Bpe08g01243 Bpe-Chr8:13946624 4.84E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01243 K04506 - pvy:116127032 476.478