Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01293 ATGGCTCTGATTCCATGGCCGCATTTCCTTCAAGTTCCAGTTCACTCGATCTATCCATCGTCTCACTGTCTACTTTACGCAGACGCTGTCTCCGTATCAAGCTTTTTTTCTCAATATGCATGTCTTCCTTCTCTGACTGCCGCGCGAGGCGGTGTCTCGTTGGTCCCGACTGTAGTGAAGGCCTCGTCCAGAGTGAAACGTTTCGCTAAGTCCACAGAGGAGGAGAAGTTGAGTGGATCGGAAATTCTAGCTCCCGAAGTTGGCGGAAGGAGTGAGCTTGACGATGAGAGTACCGCTCCATATCAAAGTTCGGAATCCGTTACTCTTCCTGCGCAGAGGATTCTTCCGTCATCGTCGAGTGATTCACTTTTGCTTGGGATTCGAGAGCCGGTTTATGAGGTGGTAGAAGTGAAATCAAATGGATCGGTATCCACTCAAAAGATTAACAGGCGTCAGTTGTTGAAGTTGAGTGGTCTTCGCCCGCGTGATATCCGGAGTGTAGATCCTTCTTTGTTTTTGACAAACTCGATGCCTTCATTGTTGGTTCGTGAGAATGCTATTTTGCTTAATCTGGGATCTTTGCGAGCGATAGCAATGAAGGAGTGTGTCCTCATATTTGACTATAACCGTAAAGGAGGGCAAGCTTTTATTGAGTCACTATTGCCTCGGTTGAACCCAAAAAGCATGAATGGGGGCCCATCAATGCCATTTGAACTTGAGGTTGTTGAAGCAGCATTGCTGTCACGAACACAGAGGTTAGAGCAGAGACTAATGAATGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTTTTGCCTACCAAATTAACTGCTGATGTATTGGAACAACTTCGCATTAGCAAGCAGACCTTGGTTGAACTGGGATCCAGAGCAGGGGCACTCAGACAAATGTTGCTTGATCTTTTGGAGGATCCTTATGAAATACGTCGCATTTGCATCATGGGGAGAAACTGTGTATTGAAGAAAGGAAGTGAAGACGTTGAGTGTTCTGTCCCTCTAGAAAAACAAATTGCTGACGAAGAAGAGGAAGAAATTGAGATGCTTCTGGAAAATTATCTTCAAAGATGCGAATCTTGTCATGGTCAGGCTGAAAGACTTCTGGACTCTGCAAAAGAAATGGAAGATTCTATTGCTGTCAATTTGAGCTCAAGGAGGTTGGAGGTCAGCAAAGTCGAACTACTTCTTCAAGTAGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGGATCTTTGGCATGAACTTAAGGTCATATCTTGAGGAGCATGTGATTGCCTTTTGGACTACTACAGCAGGGATCATAGTTGGTGGTATTGTGGCATTTTTACTCATGTATTATTACCTCAGGGCGAGAAGGATATTATAA 1386 44.88 MALIPWPHFLQVPVHSIYPSSHCLLYADAVSVSSFFSQYACLPSLTAARGGVSLVPTVVKASSRVKRFAKSTEEEKLSGSEILAPEVGGRSELDDESTAPYQSSESVTLPAQRILPSSSSDSLLLGIREPVYEVVEVKSNGSVSTQKINRRQLLKLSGLRPRDIRSVDPSLFLTNSMPSLLVRENAILLNLGSLRAIAMKECVLIFDYNRKGGQAFIESLLPRLNPKSMNGGPSMPFELEVVEAALLSRTQRLEQRLMNVEPRVQALLEVLPTKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPYEIRRICIMGRNCVLKKGSEDVECSVPLEKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSKVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVIAFWTTTAGIIVGGIVAFLLMYYYLRARRIL 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14280865 14285307 + Bpe023413.1 Bpe08g01293 108169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01293 461 Gene3D - 127 208 - -
Bpe08g01293 461 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 43 461 - -
Bpe08g01293 461 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 43 461 IPR039204 -
Bpe08g01293 461 Coils Coil 341 361 - -
Bpe08g01293 461 CDD Mrs2_Mfm1p-like 134 460 IPR039204 -
Bpe08g01293 461 Gene3D Magnesium transport protein CorA, transmembrane region 209 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01293 K16075 MRS2, MFM1; magnesium transporter - csv:101219314 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01293 Bpe-Chr8:14280865 Bpe13g01373 Bpe-Chr13:18972938 4.44E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1134 . Blo03g01303 . . . Bpe08g01293 . Bma07g01468 . . . . . . . . . Bhi08g00115 . . . . . . . . . . . . . . . Cone18ag0237 Cone11ag1343 . . . . . . . Bda09g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme12g00517
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe03g00575 . 1 443 MRS2 Gene Family AT1G16010 76.8 1.3e-182 636.0
Bpe13g01373 . 11 391 MRS2 Gene Family AT1G16010 56.2 2.7e-114 409.1
Bpe05g00868 . 1 367 MRS2 Gene Family AT5G64560 78.4 3.0e-151 531.6
Bpe07g00288 . 1 433 MRS2 Gene Family AT3G19640 64.8 3.3e-134 475.3
Bpe07g00026 . 1 446 MRS2 Gene Family AT3G58970 64.7 2.2e-145 512.3
Bpe13g01373 . 11 391 MRS2 Gene Family AT2G03620 67.8 3.9e-131 464.9
Bpe07g00026 . 61 445 MRS2 Gene Family AT4G28580 50.3 8.5e-91 330.9
Bpe05g00868 . 1 329 MRS2 Gene Family AT5G09690 73.7 6.2e-121 430.6
Bpe05g00868 . 23 289 MRS2 Gene Family AT5G09720 66.4 1.2e-81 300.1
Bpe03g00575 . 1 443 MRS2 Gene Family AT1G80900 75.5 3.1e-179 624.8
Bpe13g01373 . 11 391 MRS2 Gene Family AT1G80900 56.1 2.9e-113 405.6
Bpe08g01293 . 121 460 MRS2 Gene Family AT5G22830 82.1 2.2e-156 548.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe08g01293 Bpe_Chr08 FPKM 1.061674 1.659758 1.008948 1.001827 3.139124 3.363114 3.212101 1.985871 1.879956 1.658537