Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01328 ATGGCCACGAACCGCTTCATCTGCGAAGTGTGCAACAAGGGTTTCCAGAGAGACCAGAATCTTCAATTACACCGGCGAGGTCACAATCTACCATGGAAGCTCCGGCAGAGAACTAATAAGGAAGTGAGGAAAAAGGTGTACGTCTGCCCGGAGAAAAACTGCGTTCACCACGAACCATCGAGAGCCCTTGGCGACCTCACCGGAATAAAGAAACATTTCAGCAGAAAACACGGCGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAATATGCAGTTCAGTCCGATTGGAAAGCTCATAGTAAAATTTGTGGGACGAAGGAGTATAAATGCGATTGTGGTACACTCTTCTCCAGGAAAGACTGCTACAATACCCACAGAGCTTTTTGCGACAATTTAGTAGATGAAAGTTCAAGATTCAATTCAAATTCCAATGCGAATCAAACTTTCAGACAAGATTTGATTAATGGGTCCTTCTCGGTTTCGTTGAATCCTCAACAAGACCAAGTGATTTCCCCGTTTTCACACGTTCTGCTTCAACAAAATCATGTTTTTGCAGGTGAGCCGGCTGATAATATACTGGCAAACAACCATCTTCTTCGTTCTGATGGGCAAAAACCTAAGCTTCCAGTCTGGCTAGATTGTTCAAATTATAACTCTACCCATTTTAGCTATCCCACTGCTAATTCTGAAATGGGTTTGCAAGAACTGGTTCAATCAAACGCTGTAATGAATATGTTCGGACTTCCAAATCCTTCTGCTCAGCCACAGAACCAGTACGTTAGCAACATCTCTCGGCCCCCATTAAAATGGGGACCAAAGGAGGAAGAGGAAGGAGGAGAGGATAGAGAAAACTTGTCTCAAACGATGACGTATTTGTATTCTAACAATCAAAACAACCAGCAAATCTCAGCTCACATGTCAGCCACTGCACTATTGCAGAGAGCAGCTCAGATGGGCTCCACAAGACCAAACCCAGCGGTAAACAACGCCATTTTTGGGTTCATGACCTCGAGCGATAGCCCTCTGTCGCAAGTGACAGCGCCAATTTCCGATCCAGTCGAGAAGTTTCTGAACGTTCGCGGCGATCACGGCTTGATGAGCCAGATGTCTTCGTCTTCAGCTTCTGGTTCTAGTTTAGGAGACGGGTTATTGCTCAGCGATTTGAATTACTCCAAACCAGTCTTGATTTCGGGCAGTAATTTTGACCATCTGATGATGATTAATGGAAGTCTAAATCAAAGTGGGAAACTCAAGATGGGCGGCAATGAAAGTGAGCAGATGAGTTTAACCAGAGATTTTCTCGGCGTCGGAACTGATCTTTCGAACGAGCTGTTGAAGTTCGACGATCATCGCAACTACCTGAACCAGTACAGTGGAGGAGGATGA 1389 44.92 MATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKNCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDCYNTHRAFCDNLVDESSRFNSNSNANQTFRQDLINGSFSVSLNPQQDQVISPFSHVLLQQNHVFAGEPADNILANNHLLRSDGQKPKLPVWLDCSNYNSTHFSYPTANSEMGLQELVQSNAVMNMFGLPNPSAQPQNQYVSNISRPPLKWGPKEEEEGGEDRENLSQTMTYLYSNNQNNQQISAHMSATALLQRAAQMGSTRPNPAVNNAIFGFMTSSDSPLSQVTAPISDPVEKFLNVRGDHGLMSQMSSSSASGSSLGDGLLLSDLNYSKPVLISGSNFDHLMMINGSLNQSGKLKMGGNESEQMSLTRDFLGVGTDLSNELLKFDDHRNYLNQYSGGG 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14495662 14497416 - Bpe023447.1 Bpe08g01328 108204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01328 462 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Bpe08g01328 462 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 1 443 - -
Bpe08g01328 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 443 - -
Bpe08g01328 462 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Bpe08g01328 462 Gene3D Classic Zinc Finger 4 103 - -
Bpe08g01328 462 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Bpe08g01328 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Bpe08g01328 462 SMART c2h2final6 47 77 IPR013087 -
Bpe08g01328 462 SMART c2h2final6 6 28 IPR013087 -
Bpe08g01328 462 SMART c2h2final6 82 102 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01583 Bpe-Chr4:22108697 Bpe08g01328 Bpe-Chr8:14495662 2.32E-113 dispersed
Bpe08g01328 Bpe-Chr8:14495662 Bpe04g00209 Bpe-Chr4:1434848 9.63E-93 dispersed
Bpe08g01328 Bpe-Chr8:14495662 Bpe09g00021 Bpe-Chr9:171971 9.84E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21815 PF12171 zf-C2H2_jaz 7.80E-05 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01328 K25870 - vvi:100248459 428.328