Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01364 ATGGCGAAAATCCTGATTACATCGCCACAGTTTTGCGGGCCTCAGCTTACCTCCTTATCTCGCCGTGACTTTCACAGCTTTCGTCACCGTAAACTCGTCGCCACCAGAGTCAAGTTCAGCCTCCATGAGATACCTCCGATTCATTCGCTAGACGCAACCTTTGATTTTAAATCAGTTTTCACCAGAGCAGAAGCCCTGCTTTATACGCTCGCTGATGCAGCTGTCGCTGTGGACCCTGCGGCAACGGGAGCCGCAGCTTCCAGCTCTGCTGATACCGCTGTACAGAAGAGTGGTGGATGGTTCGGATTTATCTCCGAGGGCATGGAAATCGTTTTAAAAGTGTTGAAGGATGGGCTTAGTGCAGTACACATACCATATGCATATGGATTTGCAATCATATTGCTGACAGTTATTGTTAAAGTTGTAACATTACCTTTAACTAAGAAACAGGTGGAATCAACATTGGCAATGCAAAACCTCCAGCCAAAGATTAAAGCTATTCAACAAAGATATGCTGGAAATCAGGAAAGGATACAACTAGAGACATCTCGACTTTACAAGCAAGCTGGTGTCAATCCATTAGCAGGTTGTTTGCCCACTTTGGCTACTATACCAGTTTGGATAGGACTATATCAAGCTCTTTCGAACGTGGCAAATGAGGGTTTGTTGACTGAAGGTTTCTTTTGGATCCCTTCACTTGGTGGCCCGACTACAATTGCCGCCCGACAAAGTGGTTCTGGAATCTCCTGGCTGATACCTTTTGTGGATGGTCATCCACCATTAGGCTGGCATGACACTTTGGCATACCTTGTTTTACCTGTCCTTCTTGTAATCTCACAGTTTGTGTCAATGGAAATTATGAAGCCTCCACAGACTGATGATCCGTCCCAAAAGAATTCACTTCTTGTTTTGAAGTTTCTTCCCCTCATGATTGGTTACTTCTCTTTGTCCGTTCCGTCAGGATTATCAATTTACTGGTTCACAAACAATGTTTTAAGCACGGCACAGCAAGTATGGTTGCGAAAATTAGGAGGGGCAAAGCCTGTTGTGAGCGAGGATGGTGGTCAAATAATAACAGCAGGTCGAGCAAAACGGACGTCTGAATCAGGATGGTCGGGCGACAGTGAGGGTGGCTTCTTCAATGCCATCATGAGTTTTCCATCCAATTATCCCAACAGCCCACCTTCAGTGAAGTTTACTTCAGAAATTTGGCACCCTAATGTTTATCCTGATGGCCGTGTTTGCATTTCAATTCTTCACCCACCCGGTGATGATCCAAATGGCTATGAGCTGGCCAGTGAGCGATGGACTCCCGTGCATACAGTTGAAAGTATAGTTTTGAGTATTATATCGATGCTATCTAGCCCTAATGATGAATCTCCTGCTAATGTGGAAGCTGCTAAAGAATGGAGAGATCGGAGAGATGAATTCAAGAAAAAAGTAGGCCGTTGTGTGAGAAAGTCGCAAGAACTGTTATGA 1479 44.96 MAKILITSPQFCGPQLTSLSRRDFHSFRHRKLVATRVKFSLHEIPPIHSLDATFDFKSVFTRAEALLYTLADAAVAVDPAATGAAASSSADTAVQKSGGWFGFISEGMEIVLKVLKDGLSAVHIPYAYGFAIILLTVIVKVVTLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLIPFVDGHPPLGWHDTLAYLVLPVLLVISQFVSMEIMKPPQTDDPSQKNSLLVLKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVSEDGGQIITAGRAKRTSESGWSGDSEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKVGRCVRKSQELL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14718779 14728537 - Bpe023484.2 Bpe08g01364 108240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01364 492 Gene3D Ubiquitin Conjugating Enzyme 371 491 IPR016135 -
Bpe08g01364 492 PANTHER OXA1 1 361 IPR001708 GO:0016021|GO:0032977
Bpe08g01364 492 SUPERFAMILY UBC-like 376 488 IPR016135 -
Bpe08g01364 492 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 322 490 IPR000608 -
Bpe08g01364 492 Pfam 60Kd inner membrane protein 128 342 IPR001708 GO:0016021|GO:0032977
Bpe08g01364 492 PANTHER INNER MEMBRANE PROTEIN ALBINO3, CHLOROPLASTIC 1 361 - -
Bpe08g01364 492 SMART ubc_7 307 490 - -
Bpe08g01364 492 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 128 341 IPR028055 -
Bpe08g01364 492 CDD UBCc 376 485 IPR000608 -
Bpe08g01364 492 Pfam Ubiquitin-conjugating enzyme 376 484 IPR000608 -
Bpe08g01364 492 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 404 419 IPR023313 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe08g01364 Bpe11g00767 CCT
Bpe08g01364 Bpe11g00767 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01364 Bpe-Chr8:14718779 Bpe13g01427 Bpe-Chr13:19563870 1.52E-22 dispersed
Bpe08g01520 Bpe-Chr8:15849590 Bpe08g01364 Bpe-Chr8:14718779 5.19E-07 dispersed
Bpe11g00767 Bpe-Chr11:5774047 Bpe08g01364 Bpe-Chr8:14718779 5.76E-81 transposed
Bpe13g01495 Bpe-Chr13:20318484 Bpe08g01364 Bpe-Chr8:14718779 3.01E-144 transposed
Bpe11g00765 Bpe-Chr11:5766883 Bpe08g01364 Bpe-Chr8:14718779 9.31E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01364 K03217 - vvi:100260431 577.015