Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01408 ATGGTGGGTTCTTCACCCTGCGCTTCCTGCAAGTTGCTAAGGCGTCGATGTGCTCAGGACTGCATATTCGCCCCCTATTTCCCTTCCACCGACCCCCACAAGTTCGCCATCGTTCACAAGGTCTTTGGCGCTAGCAATGTCAGCAAAATGCTCCAGGAGCTTCCAGCTGATCAAAGGGCCGATGCTGCCAGCAGTTTGGTTTACGAAGCAAATGCAAGAGCGATGGACCCTGTTTATGGGTGCGTTGGGGCAATCTCGTTCCTTCAAAATCAAGTTTCCCAGTTGAAAAAGCAGTTGACTTTAGCTCAGGCTGAGATTCTGTGCATCAAGATGCAGCAAGACCCTGCCTTGCATTTCCAAAATGAAACATCACTTCTTCTTTCCCCCTCCAACCACTTCAACGCTATTTCTCAGTGCCTTAGCAATTCTTCTTCTTCTGCTTGCTGTGTATTCCAAGATTCTCTCAAACAAGAGTCTCATTGGAGT 486 48.56 MVGSSPCASCKLLRRRCAQDCIFAPYFPSTDPHKFAIVHKVFGASNVSKMLQELPADQRADAASSLVYEANARAMDPVYGCVGAISFLQNQVSQLKKQLTLAQAEILCIKMQQDPALHFQNETSLLLSPSNHFNAISQCLSNSSSSACCVFQDSLKQESHWS 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14943027 14943652 + Bpe026182 Bpe08g01408 108284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01408 162 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bpe08g01408 162 Coils Coil 85 105 - -
Bpe08g01408 162 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Bpe08g01408 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 134 - -
Bpe08g01408 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01408 Bpe-Chr8:14943027 Bpe11g01042 Bpe-Chr11:7773367 3.39E-55 dispersed
Bpe15g01174 Bpe-Chr15:20604486 Bpe08g01408 Bpe-Chr8:14943027 4.53E-69 wgd
Bpe04g01798 Bpe-Chr4:23446699 Bpe08g01408 Bpe-Chr8:14943027 3.48E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21822 PF03195 LOB 1.20E-41 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01408 - - pop:7496801 223.787