Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01420 AAGCGGATAAAAAGAGAGGGAGATGTATACTTTGAAATGGACAGGAGACAGTCGTCTACTCCTGCAGGGATGACGATGCTGAATACAATCACACCTTGCGCTGCCTGTAAGCTGTTAAGAAGAAGATGCGCTGAAGAGTGTGCTTTCTCTCCCTACTTTTCCCCCCACGAACCCCAAAAGTTTGCAGCCGTCCACAAAGTTTTCGGTGCAAGCAACGTTTCCAAGTTGTTGATGGAAGTCGCGGAGACGCAGAGGGCAGATGCGGCAAATAGCTTAATATTTGAAGCAAACTTGAGAATAAGAGACCCAGTGTATGGATGCATGGGTGCCATTTCCATTCTGCAACAACAAATTCAGATTTTGCAAGGAGAGCTAGACACGGTGAGAGGTGAGATACTGAAGTACAAATATAGGAAAGCCACCGGCTGCCAAATGATTGCTTCTAGCTCTGCCCCTTGGTCTTTATCTTCTTCAGTTGCCTCAACCCCACAAGCTCAAGCTCTTCTACCACCTCTTGTTACTTCTTCCTCTTCTTCCTCTTCCTGTTCCATTTACAATCCTGCAGCTAGTTCAACTGTTTACAGTTCCGCAACAAACGATAGCAGCGTCTCATACTTACATGATTAG 627 45.93 KRIKREGDVYFEMDRRQSSTPAGMTMLNTITPCAACKLLRRRCAEECAFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVAETQRADAANSLIFEANLRIRDPVYGCMGAISILQQQIQILQGELDTVRGEILKYKYRKATGCQMIASSSAPWSLSSSVASTPQAQALLPPLVTSSSSSSSCSIYNPAASSTVYSSATNDSSVSYLHD 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14992063 14992772 + Bpe023534.1 Bpe08g01420 108296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01420 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 21 205 - -
Bpe08g01420 208 Coils Coil 111 131 - -
Bpe08g01420 208 ProSiteProfiles LOB domain profile. 31 132 IPR004883 -
Bpe08g01420 208 Pfam Lateral organ boundaries (LOB) domain 32 128 IPR004883 -
Bpe08g01420 208 PANTHER LOB DOMAIN PROTEIN 21 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01761 Bpe-Chr4:23257142 Bpe08g01420 Bpe-Chr8:14992063 8.47E-61 dispersed
Bpe08g01420 Bpe-Chr8:14992063 Bpe15g01223 Bpe-Chr15:20852868 1.39E-73 dispersed
Bpe15g01197 Bpe-Chr15:20728436 Bpe08g01420 Bpe-Chr8:14992063 1.82E-22 wgd
Bpe04g01798 Bpe-Chr4:23446699 Bpe08g01420 Bpe-Chr8:14992063 1.69E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21824 PF03195 LOB 1.30E-38 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01420 - - csin:114259621 227.639