Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01434 ATGCGAATGAAGGAAATGCACCCTCTGTGCTGTATCTCTATAGAGAGTTTTGGAAGCGGAGGTAATTTTCGTGATAACTCATCGGAGGAGGCGATTTTATCGAGGTCCAGGAGCTTACCGGCGAGTTTTGCAGCTTTTGCCGGCAGATCTAACAGCAATGCCGGACCGTTACAACCTGGATCGCAATCCATCGTTGCCGGAATTCTCTATAAGTGGACAAATTACGGGAAAGGGTGGAGATCGAGGTGGTTTTTATTGCGCGATGGCGTTCTGTCCTATGCTAAAATTCAACAACCGGAAAGCCTAAATCTCTCAACTCCGAACGACGATATAAGATTCATCGGAGAAATTTCTACAAATCGGCTTTCGAGATTGGATGCCGGGGGAGGAAGAAGAAAGCATCAGAAGTTCGTCGGAGTAGTACAGCTTAAGATCTCATCATTCCGAGAGAGCAAGTCTGATGATAGGCGGTTTTATATTTTTACTGCTACTAAGACTCTTCATTTGAGGACTGACACAAAGGAGGATAGAACAGCTTGGCTACAAGCTTTACTTACAATTCGTGGCCTATTTTCACCAAGGATGATAAATGATAACCGACCAATTGTACCTAGTGAATTGTTTGTATCAACTGAGACACTTAAGAAACGATTACTTGAAGAGGGAATGAATGAGACTCTTGTAAAGGATTGCGAACAGATTATGCTTTCTGAATTCTCAGAAATTCGAGGTCAGCTTCAAGTTTTATGCGATGAACGCTCGAATTTGATTCATACTATAAGGCAATTGGAGGCTGCGAATATTGAAACTGAAGCAACAGATATGCATAACAGCAAGTACCAATTGCCACAGCACGAGTTTTCCACAGTTGAAGAACGCAAATATAGCGAATGTAGCGCAACTGAATCATCTGATGGCATCGAGGTAAAAGAGTTCGAGGATGTGTCAGATGAAGATGAAATGTCCTTTTATGACACAAAAGAGTGTTTTACAGAACTTTGCCATTTAAGACCAGATTCATATGGGATAGATGAGAACAGGGAATTTGAAGGTCAATATTCATGCATTAACAGACGTCGAAGACTTCCTAATCCTGCTGAAAAGGAGAAAAGAGTTAGTCTTTGGTCTATGATCAAAGATAATGTAGGAAAGGATTTAACCCGAGTTTGCCTCCCTGTTTATTTTAACGAGCCCATATCTTCCCTTCAGAAATGTTGCGAGGACTTGGAATACTCTTACCTTCTGGATCGAGCATATGACCATGGAAAAAATGGCAATAGTCTCCTGAGGGCCCTCAATGTAGCTACTTTTGCAGTTTCTGGTTATGCTTCGTCTGTGGGGCGGCACTGTAAACCTTTCAATCCTTTGTTAGGGGAAACTTACGAAGCTGATTATCCCGAGAAAGGAATTCGCTTCTTCTCTGAAAAGGTAAGTCACCATCCAACCCTCATTGCATGTCACTGCGAAGGTACAGGATGGAAATTCTGGGGTGATAGCAACCTCCATTCAAAATTCTGGGGTAGGTCCATTCAGCTTGAACCAGTTGGAGTTCTAACTCTGGAGTTTGATGATGGAGAAATCTTCCAGTGGAGCAAGGTTACAACAAATATATACAATCTCATTCTTGGAAAAGTGTATTGTGATCATCATGGAATGATGCATGTACGTGGCAACAGACAGTATTCTTGCAAACTCACGTTCAAAGAACAATCTATTCTGGACCGAAATCCCCACCAGGTTCGTGGATATGTAGAAGATGTCATGGGAAAAAAGGCAGCCTCGCTAATTGGTAAGTGGGACGACTGCATTTATTATGTCAACGACGATGGGGCAGGATATTCAAAAGGCAGCTTTAGTTTATGTGACGCCACTTTGTTGTGGAGAAGTTGTAAACCTCCACCAAATCTCACTCGTTATAACCTGTCTTCATTTGCAATCACGCTTAATGAACTCACAGAGGGTCTTAAGGAAAAGCTCCCACCCACAGATTCTAGACTGCGACCAGACCAGCGGCATTTAGAAAACGGGGAGTATGATCAGGCAAATGAGGAAAAACAACGATTAGAGAAAAGGCAAAGAATATCAAGGAAACTCCAAGAAAACGGGTGGAGGCCAATGTGGTTCCAAAGAGAGAGAGAAGATGGACCATTCCGTTATGTGGGCGGATACTGGGAAGCTCGAGAGGCAGGAAAATGGGAAGACTGCCCTGATATATTTGGAGAATTGAATGAAGAGCTCGATGCCAATTAG 2250 42.8 MRMKEMHPLCCISIESFGSGGNFRDNSSEEAILSRSRSLPASFAAFAGRSNSNAGPLQPGSQSIVAGILYKWTNYGKGWRSRWFLLRDGVLSYAKIQQPESLNLSTPNDDIRFIGEISTNRLSRLDAGGGRRKHQKFVGVVQLKISSFRESKSDDRRFYIFTATKTLHLRTDTKEDRTAWLQALLTIRGLFSPRMINDNRPIVPSELFVSTETLKKRLLEEGMNETLVKDCEQIMLSEFSEIRGQLQVLCDERSNLIHTIRQLEAANIETEATDMHNSKYQLPQHEFSTVEERKYSECSATESSDGIEVKEFEDVSDEDEMSFYDTKECFTELCHLRPDSYGIDENREFEGQYSCINRRRRLPNPAEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDLEYSYLLDRAYDHGKNGNSLLRALNVATFAVSGYASSVGRHCKPFNPLLGETYEADYPEKGIRFFSEKVSHHPTLIACHCEGTGWKFWGDSNLHSKFWGRSIQLEPVGVLTLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGMMHVRGNRQYSCKLTFKEQSILDRNPHQVRGYVEDVMGKKAASLIGKWDDCIYYVNDDGAGYSKGSFSLCDATLLWRSCKPPPNLTRYNLSSFAITLNELTEGLKEKLPPTDSRLRPDQRHLENGEYDQANEEKQRLEKRQRISRKLQENGWRPMWFQREREDGPFRYVGGYWEAREAGKWEDCPDIFGELNEELDAN 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15085682 15090185 - Bpe023548.2 Bpe08g01434 108310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01434 749 Pfam Oxysterol-binding protein 373 728 IPR000648 GO:0008289
Bpe08g01434 749 Pfam Pleckstrin homology domain 67 184 - -
Bpe08g01434 749 SUPERFAMILY PH domain-like 51 199 - -
Bpe08g01434 749 SMART PH_update 63 191 IPR001849 -
Bpe08g01434 749 Gene3D - 459 626 - -
Bpe08g01434 749 Coils Coil 671 701 - -
Bpe08g01434 749 Gene3D - 60 189 IPR011993 -
Bpe08g01434 749 Gene3D - 670 733 - -
Bpe08g01434 749 MobiDBLite consensus disorder prediction 658 686 - -
Bpe08g01434 749 ProSiteProfiles PH domain profile. 62 189 IPR001849 -
Bpe08g01434 749 SUPERFAMILY Oxysterol-binding protein-like 368 742 IPR037239 -
Bpe08g01434 749 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 743 - -
Bpe08g01434 749 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 743 IPR000648 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01434 K20456 OSBP; oxysterol-binding protein 1 - tcc:18606296 1112.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g01434 Bpe11g00265 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01623 Bpe-Chr2:19095987 Bpe08g01434 Bpe-Chr8:15085682 0 dispersed
Bpe08g01434 Bpe-Chr8:15085682 Bpe14g00370 Bpe-Chr14:3511212 0 dispersed
Bpe11g00265 Bpe-Chr11:1931008 Bpe08g01434 Bpe-Chr8:15085682 0 wgd
Bpe05g00588 Bpe-Chr5:19938322 Bpe08g01434 Bpe-Chr8:15085682 0 wgd
Bpe07g00165 Bpe-Chr7:1133245 Bpe08g01434 Bpe-Chr8:15085682 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88