Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01446 ATGGGCAAGCATGGACCTTGCTATCACTGTGGAGTGACAAGCACTCCCTTGTGGCGCAACGGGCCTCCTGATAAGCCAGTATTGTGCAATGCATGTGGATCACGATGGAGGACTAAGGGAACTCTTGCAAACTATACCCCTCTCCACTCTAGGATGTATCCTGATGACTATGAAGATCAAAAGGCTTGTAAGGAGAAGATAATATCTATAAATAAAAACAAAGAAGGGAAAACACTAAAACATAAGCATAATCATGAAAACATGATGGTTGGAATGGTAATTTCCAACCAAAGTCATGGTTTCTGGAAGACAATGGATGAAGATATAAGCAATAGATCAAGCTCAGGGTCAGCATTATCTAACTCAGACAGCTGTGTGCAATTTGGTAGTGCCGAGGCTAGTGATTTGACAGGTCCAGCTCAGTCTGTTGTTTGGGATTCAACGGTGCCTTCGAAAAAGAGGACTTGTGCGGGTCGACCTAAGCAATCATCAGTAGAGAAACTTACAAAAGATCTATGTACTATTTTACATGAACAACAATCTTCTTATTTCTCTGGATCATCCGAGGAAGATTTACTTTTCGAGACTGAAAAACCTATGGTCTCTGTTGAGATAGGACATGGAAGTGTTTTAATTAGACATCCCAGCTTAATTGCCCGAGAAGAGGAATCTGAGGCTAGCTCGCTCTCTGTTGATAATAAATATTGTTCTGTCAATGAAATGTATTCCAATTCTTTAACTCTTAATCACCACAACAATAACAAGAATGTCAACTTTTTAACTCCTGGAACTCAAAGGATGAAGAACCCTGCTGGGAAAGAGGTGCATCAAGAACAAATCAAAGGGGACAAGTCTCACCATGAAAAATTACTAGTTCTTGGAAATCGCAACTCACCTCTATGCGATATAGATCTAAATGATGTTCTAAATTTTGAGGAGTTTACGAGACAATTGACGAGTGAAGAGCAACAACAATTGACGAAGTATCTTCCTCTTGTTGATGCTGCTGAATGTCCTGACAGCCTCAAGGATATGTTTGATAGCTCACAATTCAAGGAGAATTTTACTTTCTTCCAGCAACTGCTAGCAGAAGGTATCTTCGATAACTCTTTTTCAGGACCTAAAATTGAAGACTGCAAAATGCTTAGAAGATTCGCCTTATTTGATTTGTCCAAATCCAAGTGGGTGAAACGATACAATCTGCTTAAGAAGTGTAAGAACAGTAGTAGAGTGTCTATTGTTTCAGAAGATAATTCCATGGCGTTAAGTAATATTATTAGCATGAAGAGGTCTCGTGATTCCCAAAGTAAAAAATTTCCAGAGATGAAGACTATCATGAAGAGTTCAAAAACGGTGGCAGTGAAGTCCGATCTCGGAGACAATGATGGTTTTTGTTTTAGCCCAAGAACCTTATTTGCTGTACCTCCAGACGGGAGCTCTCTTGTTCTTGAAACTCTAAATTTTGCAGAAGACAGTTACGAACAAGATCTTCTTCTCGAAGTTCGGCCGAATAATTCCTTCCCTCAGGCAGAGCTTCTCCATCTGTCTTCAAGCTTTGGAGCTCAACAAGCAAGCACTTGCAGTAGCTCGAATTCTCATATTGCACGACAGTGA 1614 40.21 MGKHGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHSRMYPDDYEDQKACKEKIISINKNKEGKTLKHKHNHENMMVGMVISNQSHGFWKTMDEDISNRSSSGSALSNSDSCVQFGSAEASDLTGPAQSVVWDSTVPSKKRTCAGRPKQSSVEKLTKDLCTILHEQQSSYFSGSSEEDLLFETEKPMVSVEIGHGSVLIRHPSLIAREEESEASSLSVDNKYCSVNEMYSNSLTLNHHNNNKNVNFLTPGTQRMKNPAGKEVHQEQIKGDKSHHEKLLVLGNRNSPLCDIDLNDVLNFEEFTRQLTSEEQQQLTKYLPLVDAAECPDSLKDMFDSSQFKENFTFFQQLLAEGIFDNSFSGPKIEDCKMLRRFALFDLSKSKWVKRYNLLKKCKNSSRVSIVSEDNSMALSNIISMKRSRDSQSKKFPEMKTIMKSSKTVAVKSDLGDNDGFCFSPRTLFAVPPDGSSLVLETLNFAEDSYEQDLLLEVRPNNSFPQAELLHLSSSFGAQQASTCSSSNSHIARQ 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15207547 15213331 - Bpe023559.1 Bpe08g01446 108322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01446 537 PANTHER GATA TRANSCRIPTION FACTOR 26 1 532 - -
Bpe08g01446 537 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Bpe08g01446 537 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Bpe08g01446 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 47 - -
Bpe08g01446 537 Gene3D - 294 378 IPR038108 -
Bpe08g01446 537 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Bpe08g01446 537 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Bpe08g01446 537 Pfam Asx homology domain 284 369 IPR028020 -
Bpe08g01446 537 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Bpe08g01446 537 PANTHER OSJNBB0038F03.10 PROTEIN 1 532 IPR044589 -
Bpe08g01446 537 Gene3D - 4 86 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01446 - - - zju:107407398 693.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00554 Bpe-Chr5:19678070 Bpe08g01446 Bpe-Chr8:15207547 3.27E-170 dispersed
Bpe08g01446 Bpe-Chr8:15207547 Bpe06g00027 Bpe-Chr6:313581 3.10E-08 dispersed
Bpe08g01446 Bpe-Chr8:15207547 Bpe07g00195 Bpe-Chr7:1343258 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00427 CCT,ECH 14 325 C2C2-Gata Transcription Factor Family AT5G66320 51.3 1.4e-67 253.4
Bpe06g00027 CCT,ECH 4 297 C2C2-Gata Transcription Factor Family AT5G66320 50.6 2.0e-61 233.0
Bpe06g00027 CCT,ECH 44 297 C2C2-Gata Transcription Factor Family AT3G51080 51.1 6.6e-51 198.0
Bpe08g01446 . 1 514 C2C2-Gata Transcription Factor Family AT4G17570 51.8 3.4e-129 458.8
Bpe07g00195 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 3.6e-123 438.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21829 PF13919 ASXH 2.40E-08 No_clan Bpe TF