Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe08g01465 | ATGGTTAGGGGAAGAACTCAGATGAAGAGGATAGAGAATGCAACGAGCCGGCAAGTAACTTTTTCAAAGCGTAGAAATGGGTTGCTGAAGAAAGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATCTTCTCCACCAGAGGAAAACTCTATGAATTTTCCAGTCGCAGCATGCATAAGACGATAGATCGCTATAAGAACAGAACCAAGGAACTAGAGCACGGGAAAAAAGCTATTCAAGCAAATATTCAGGAAGAAAAGGATGATCAAGACATTATTAGCATGGCAAAGAAGATTGAGAATCTCGAATCTTCTAAACGAAAACTCATGGGAGAGGGCTTGGATTCATGTTCTCTTGACGAACTACAGCAAACAGAAAAGCAATTGGAGAAAAGCTTGAGCAAGATTAGGACAAAAAAGGTGCATACTTAG | 444 | 40.32 | MVRGRTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSRSMHKTIDRYKNRTKELEHGKKAIQANIQEEKDDQDIISMAKKIENLESSKRKLMGEGLDSCSLDELQQTEKQLEKSLSKIRTKKVHT | 147 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 15372298 | 15374620 | - | Bpe023577.1 | Bpe08g01465 | 108341 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe08g01465 | 147 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe08g01465 | 147 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe08g01465 | 147 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe08g01465 | 147 | ProSiteProfiles | K-box domain profile. | 89 | 147 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bpe08g01465 | 147 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe08g01465 | 147 | PANTHER | MADS-BOX PROTEIN SOC1-LIKE ISOFORM X1 | 1 | 144 | - | - | |
Bpe08g01465 | 147 | Gene3D | - | 13 | 104 | IPR036879 | GO:0003677|GO:0046983 | |
Bpe08g01465 | 147 | Coils | Coil | 123 | 143 | - | - | |
Bpe08g01465 | 147 | Pfam | K-box region | 88 | 146 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bpe08g01465 | 147 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe08g01465 | 147 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe08g01465 | 147 | Coils | Coil | 66 | 86 | - | - | |
Bpe08g01465 | 147 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe08g01465 | 147 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 144 | - | - | |
Bpe08g01465 | 147 | CDD | MADS_MEF2_like | 3 | 71 | IPR033896 | GO:0000977|GO:0045944 | |
Bpe08g01465 | 147 | SUPERFAMILY | SRF-like | 3 | 74 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe03g00328 | Bpe-Chr3:5135188 | Bpe08g01465 | Bpe-Chr8:15372298 | 1.86E-32 | dispersed | |
Bpe08g01465 | Bpe-Chr8:15372298 | Bpe03g00105 | Bpe-Chr3:1595961 | 3.02E-43 | dispersed | |
Bpe12g00408 | Bpe-Chr12:9678254 | Bpe08g01465 | Bpe-Chr8:15372298 | 5.42E-30 | dispersed | |
Bpe05g00920 | Bpe-Chr5:22177393 | Bpe08g01465 | Bpe-Chr8:15372298 | 3.94E-55 | transposed | |
Bpe14g00906 | Bpe-Chr14:6756127 | Bpe08g01465 | Bpe-Chr8:15372298 | 7.00E-51 | transposed | |
Bpe07g00957 | Bpe-Chr7:15358969 | Bpe08g01465 | Bpe-Chr8:15372298 | 1.24E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21830 | PF01486 | K-box | 3.10E-16 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe08g01465 | - | - | csv:101220518 | 203.371 |