Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01465 ATGGTTAGGGGAAGAACTCAGATGAAGAGGATAGAGAATGCAACGAGCCGGCAAGTAACTTTTTCAAAGCGTAGAAATGGGTTGCTGAAGAAAGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATCTTCTCCACCAGAGGAAAACTCTATGAATTTTCCAGTCGCAGCATGCATAAGACGATAGATCGCTATAAGAACAGAACCAAGGAACTAGAGCACGGGAAAAAAGCTATTCAAGCAAATATTCAGGAAGAAAAGGATGATCAAGACATTATTAGCATGGCAAAGAAGATTGAGAATCTCGAATCTTCTAAACGAAAACTCATGGGAGAGGGCTTGGATTCATGTTCTCTTGACGAACTACAGCAAACAGAAAAGCAATTGGAGAAAAGCTTGAGCAAGATTAGGACAAAAAAGGTGCATACTTAG 444 40.32 MVRGRTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSRSMHKTIDRYKNRTKELEHGKKAIQANIQEEKDDQDIISMAKKIENLESSKRKLMGEGLDSCSLDELQQTEKQLEKSLSKIRTKKVHT 147
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 15372298 15374620 - Bpe023577.1 Bpe08g01465 108341
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01465 147 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe08g01465 147 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe08g01465 147 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe08g01465 147 ProSiteProfiles K-box domain profile. 89 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe08g01465 147 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe08g01465 147 PANTHER MADS-BOX PROTEIN SOC1-LIKE ISOFORM X1 1 144 - -
Bpe08g01465 147 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Bpe08g01465 147 Coils Coil 123 143 - -
Bpe08g01465 147 Pfam K-box region 88 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe08g01465 147 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe08g01465 147 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe08g01465 147 Coils Coil 66 86 - -
Bpe08g01465 147 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe08g01465 147 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 144 - -
Bpe08g01465 147 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Bpe08g01465 147 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00328 Bpe-Chr3:5135188 Bpe08g01465 Bpe-Chr8:15372298 1.86E-32 dispersed
Bpe08g01465 Bpe-Chr8:15372298 Bpe03g00105 Bpe-Chr3:1595961 3.02E-43 dispersed
Bpe12g00408 Bpe-Chr12:9678254 Bpe08g01465 Bpe-Chr8:15372298 5.42E-30 dispersed
Bpe05g00920 Bpe-Chr5:22177393 Bpe08g01465 Bpe-Chr8:15372298 3.94E-55 transposed
Bpe14g00906 Bpe-Chr14:6756127 Bpe08g01465 Bpe-Chr8:15372298 7.00E-51 transposed
Bpe07g00957 Bpe-Chr7:15358969 Bpe08g01465 Bpe-Chr8:15372298 1.24E-31 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21830 PF01486 K-box 3.10E-16 No_clan Bpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01465 - - csv:101220518 203.371