Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe08g01469 | ATGCAAGAACCAGGCTATGGAATGATCGCCGCCTCAGCAGGTTGTGGTTCTGGTTTGAGCGGCGATTTATCAGTCTCCGGCGACCACCGTCACCGGCAAATCAAGGCCGAGATAGCCGGTCATCCAATATACGAGCAGCTTCTCGCCGCCCACGTGGCCTGTCTTCGGGTAGCTACCCCTATTGATCAGTTGCCGCTTATAGACGCGCAGTTGGAGCAATCAGAACATCTTTTACGCTCTTATTCGGCGAACTCGCAACATCACCAATGCCATTCTCTATCCCCCCATGAGCGCCAAGAGCTTGACAACTGCTTGGCACAGTATCTGTTAGTTTTGTGTTCTTTTAAAGAACAGCTTCAACAACATATTAGAGTTCATGCTGTTGAAGCTGTCATGGCCTGCCGAGAAATTGAAAACACTTTACAAGCTCTCACTGGAGCTAGTCTTGGAGAAGGTACAGGAGCAACAATGTCAGATGAAGAAGAAGAAGATGTGCAGATGGATTTCTCGTTGGACCCATCTGGTGCAGATGGCCATGACATGATGGGTTTTGGCCCTCTTCTTCCTACTGAATCTGAAAGATCTCTAATGGAGAGGGTTCGCCAAGAACTCAAGATTGAGTTGAAGCAGTTAGTTAAACTTCCATCGTTGTTGCAGGGTTTTAAGTCTAGAATTGAAGATGTTAGAGAAGAAATACTAAGGAAAAGAAGGGCTGGAAAATTACCCTGTGATACAACTACTGTGCTAAAAACTTGGTGGCAACAGCATTCTAAATGGCCTTACCCAACTGAAGATGATAAGGCAAAGCTAGTAGAGGAGACGGGATTGCAGTTGAAACAAATAAACAACTGGTTCATTAATCAAAGAAAGAGAAATTGGCATACCAATTCTCAATCTGTGACATCCTTAAAGTCCAAGCGCAAGAGATAA | 930 | 45.16 | MQEPGYGMIAASAGCGSGLSGDLSVSGDHRHRQIKAEIAGHPIYEQLLAAHVACLRVATPIDQLPLIDAQLEQSEHLLRSYSANSQHHQCHSLSPHERQELDNCLAQYLLVLCSFKEQLQQHIRVHAVEAVMACREIENTLQALTGASLGEGTGATMSDEEEEDVQMDFSLDPSGADGHDMMGFGPLLPTESERSLMERVRQELKIELKQLVKLPSLLQGFKSRIEDVREEILRKRRAGKLPCDTTTVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHTNSQSVTSLKSKRKR | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 15405169 | 15408464 | + | Bpe023581.1 | Bpe08g01469 | 108345 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe08g01469 | 309 | Pfam | KNOX2 domain | 94 | 145 | IPR005541 | GO:0003677|GO:0005634 | |
| Bpe08g01469 | 309 | Gene3D | - | 231 | 305 | - | - | |
| Bpe08g01469 | 309 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 309 | - | - | |
| Bpe08g01469 | 309 | CDD | homeodomain | 234 | 296 | IPR001356 | GO:0003677 | |
| Bpe08g01469 | 309 | Pfam | Homeobox KN domain | 252 | 291 | IPR008422 | GO:0003677|GO:0006355 | |
| Bpe08g01469 | 309 | SMART | KNOX2_2 | 91 | 146 | IPR005541 | GO:0003677|GO:0005634 | |
| Bpe08g01469 | 309 | SMART | HOX_1 | 234 | 299 | IPR001356 | GO:0003677 | |
| Bpe08g01469 | 309 | Pfam | KNOX1 domain | 33 | 75 | IPR005540 | GO:0003677|GO:0005634 | |
| Bpe08g01469 | 309 | SUPERFAMILY | Homeodomain-like | 235 | 299 | IPR009057 | - | |
| Bpe08g01469 | 309 | SMART | KNOX1_2 | 32 | 76 | IPR005540 | GO:0003677|GO:0005634 | |
| Bpe08g01469 | 309 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 | 2 | 309 | - | - | |
| Bpe08g01469 | 309 | ProSiteProfiles | 'Homeobox' domain profile. | 232 | 295 | IPR001356 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bpe08g01469 | Bpe11g00693 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe08g01469 | Bpe-Chr8:15405169 | Bpe11g01776 | Bpe-Chr11:14122221 | 5.61E-28 | dispersed | |
| Bpe08g00867 | Bpe-Chr8:11044130 | Bpe08g01469 | Bpe-Chr8:15405169 | 0 | transposed | |
| Bpe11g00693 | Bpe-Chr11:5336908 | Bpe08g01469 | Bpe-Chr8:15405169 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 21831 | PF03791 | KNOX2 | 3.60E-16 | No_clan | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe08g01469 | - | - | csv:101206054 | 504.597 |