Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01471 ATGACGTCGTATCAGGAGCAGGAGTTCGATCAGAACGACGACGGAGCCAACTCCGATCTCAGCACCAGCGCTGGCGACCCGGAAGAAGACCCTCCCACGACGGAGCTCATAAATTATAAGATGGCTTTTCGAGCTGCCCCGATGAAAGAAGAACCGGTCGATTCCGACCTAATATCGGACCACGACGAGAAGACGAAGCTGCCACCGGAACCTTCCATTGGGGTGCTTCCCGTCGCGATGAAGCTGCCGTTGCAGATGCCGGTGAGTGCACCTCGGAGGTCTACGAAGGACAGGCACACCAAGGTAGAGGGACGAGGTCGGAGGATCCGAATACCCGCTACCTGCGCCGCCCGAATATTTCAGCTGACCCGAGAATTGGGTCACAAATCGGACGGTGAGACCGTCCGGTGGCTTCTCGAACACGCGGAGCAAGCGATAATTGAGGCCACAGGAACCGGAACTGTGCCAGCCATCGCCGTCTCCGTCGGTGGGACCCTTAAAATCCCGACCACCGCTAACTCCGACGTCCTGAGCAATCACGAGAATAAAAAGAGAAAGCGGCCATCGAACTCTGAGTTCTTCGACATAAACGAAGCGGTTTCACACTCAACCGGGTTCGCTCCAGTCCAACCGGTAACCCCTACAGCGGCGATTCCACAGGGTCTTTTACCAATATGGGCCGTGGGAAACACCGGGATGATGGTTCCCGCTAACGCCTTCTGGATGATTCAGGCTGCGCCGACTCCAACAGGCCAGGTTACCGCCGCTGGACCGTCTAACCAAAACCCTCAGATATGGACCATATCGCCGACTGTAACGCAGGTTTTCAACATGTCTGCGAGACCCATTTCCTCTTTCGTCTCAAATCAGCCATTAGGGGTCACTATTCCGTCTGGGATCGAGATCCGGCCGCCAGCGCTCTCCTTCTGCAACAGCTTGTCGACTTCAGCCGTTAGCACGAGCACTTCCGGGCCCAAAACGGCTGAGAAATCAGCTACTATGGCGGCGCCTAGCGTGAGCTCTAGTGGCAGCGGAAATGGCGGGTCCAAAGCTCAGATGCTTAGGGATTTTTCATTGGAGATTTTTGACAAGCAGGAGTTACAGTTTATGGGTAGGAATGGGAATAACCAGAAGACACAATCTTCTTTGAAACCATGA 1158 54.92 MTSYQEQEFDQNDDGANSDLSTSAGDPEEDPPTTELINYKMAFRAAPMKEEPVDSDLISDHDEKTKLPPEPSIGVLPVAMKLPLQMPVSAPRRSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTTANSDVLSNHENKKRKRPSNSEFFDINEAVSHSTGFAPVQPVTPTAAIPQGLLPIWAVGNTGMMVPANAFWMIQAAPTPTGQVTAAGPSNQNPQIWTISPTVTQVFNMSARPISSFVSNQPLGVTIPSGIEIRPPALSFCNSLSTSAVSTSTSGPKTAEKSATMAAPSVSSSGSGNGGSKAQMLRDFSLEIFDKQELQFMGRNGNNQKTQSSLKP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15429333 15430490 - Bpe023583.1 Bpe08g01471 108347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01471 385 MobiDBLite consensus disorder prediction 1 35 - -
Bpe08g01471 385 Pfam TCP family transcription factor 94 184 IPR017887 -
Bpe08g01471 385 MobiDBLite consensus disorder prediction 318 351 - -
Bpe08g01471 385 ProSiteProfiles TCP domain profile. 95 149 IPR017887 -
Bpe08g01471 385 PANTHER TRANSCRIPTION FACTOR TCP9-LIKE 6 380 - -
Bpe08g01471 385 MobiDBLite consensus disorder prediction 1 28 - -
Bpe08g01471 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 6 380 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01471 - - - zju:107405250 446.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g01471 Bpe11g00690 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01471 Bpe-Chr8:15429333 Bpe10g00751 Bpe-Chr10:13819990 1.76E-32 dispersed
Bpe03g00315 Bpe-Chr3:4590295 Bpe08g01471 Bpe-Chr8:15429333 1.96E-60 transposed
Bpe11g00690 Bpe-Chr11:5321711 Bpe08g01471 Bpe-Chr8:15429333 8.98E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00011 . 35 261 TCP Transcription Factor Family AT5G23280 54.0 2.3e-54 209.1
Bpe15g00954 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.6e-52 203.0
Bpe08g01471 BCT 92 370 TCP Transcription Factor Family AT2G45680 50.3 1.5e-54 210.3
Bpe15g00605 BCT,CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 82.7 3.3e-41 166.4
Bpe09g00550 . 1 287 TCP Transcription Factor Family AT3G27010 53.1 7.3e-66 247.7
Bpe11g01485 . 6 257 TCP Transcription Factor Family AT3G27010 55.4 5.0e-59 224.9
Bpe15g00954 . 1 259 TCP Transcription Factor Family AT5G08330 51.6 5.9e-60 227.6
Bpe12g00011 . 1 259 TCP Transcription Factor Family AT5G08330 51.8 1.5e-58 223.0
Bpe12g00521 CCT 27 126 TCP Transcription Factor Family AT5G60970 77.2 1.9e-38 156.8
Bpe14g00144 . 29 154 TCP Transcription Factor Family AT3G02150 65.4 9.5e-38 154.5
Bpe15g00176 BCT,CCT,ECH 8 191 TCP Transcription Factor Family AT2G31070 53.8 6.4e-42 168.3
Bpe12g00269 . 14 198 TCP Transcription Factor Family AT2G31070 53.5 2.7e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21832 PF03634 TCP 2.50E-28 No_clan Bpe TF