Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe08g01496 ATGACTAGGAATAATGGGTTTTTCGCAAAAGCCCACAATATTCAACAGCAAGAACAGATCTTCCGAGACGGGTTGGTCGGAAAAGTTGCAGATCTTCACCAACACCGCCAGTTTCACCTTGGGAACTCGAAATACTTGATTCCAACGCAGCACCTTTTAAATGAATTCTGCAGCCTTGGATTGAGGCATGGTGATGGAGAGAAGAAGGGTCCTAAAATCAAACAGTGGGTCGAAGAAAATGCTACTGCTTCATTGAGGAAGCAGTCTCTTCAATCCCTTGATTTTATCGAATTACAGAAGAGAAAAACAAGACTGTTTTCGATGATGGAAGAGCTGGAGCGTAGATACAGGCACTACTGCGACCAAATGAAAATGGTGGTGTCTTCGTTTGAAGCAGTGGCCGGAGAGGGAGCTGCGAATGTGTATTCGGCTTTGGCCTGCAAGGCCTTGTCGAGGCATTTCAGGTGTTTGAAAGATGGGATAGTGACGCAGATTCAGGCTGTGAAGAAGGCGATGGGAGAGAAAGATCAGCAGGCTTCAGTGCCCGGGGGGTCAAAGGGTGAAACGCCGAGGCTGTGCATTCTGGATCAGACGCTTAGAAGGCAAAGGGCTTTCCAGCAGATGAGCTTGATGGAGAGCCATCCATGGCGGCCCCAACGTGGTCTTCCTGAACGATCCGTTTCCATTCTCCGAGCTTGGCTGTTCGAGCACTTTCTTCACCCGTATCCAAGCGACGTAGATAAACATATTCTGGCCCGCCAAACTTCTCTCTCAAGAAGCCAGGTCTCCAACTGGTTCATTAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTGGAAGATATGTACTTGGAAGAAGTAAAGGAGCAAGAAAACACCCTGACCTCCTCCGACGGAGGCATTGATGTCAACAACATAGGAAGAGCACGGCCAGAAGATCAAAAGCCGACTGCCGACCAACTCCTTAGAATCAACTGCGATTCCCTTTCCTCCATCATCAACAACCCACCAAAAAATGACACGAAACCCTCCAAAACCATGCAAAACCACCACCAACAACAACAGCAGCAACAAAATTTCAGCTCATTTGGGATGACGGAGCTTGATTTCTCCTCCTACAATCACCACTCATCCGGAGCTGTTTCCTTACCAAGTGACAGTCAAGTTAATCATAATTTCAATGGTGGCGGGGGCGGTGTCTCGTTGACACTAGGGCTGCAACAGCACGGCGGTAATGGGTCCGGGAGATTAGCATTTTCTTCCCCACCTCAAACTAACTCTTTCTTCTACACTAGAGATTCCATGGATGAATGCCAACCAGCTGTTCACTACTCTCTTTTTGATGGAGAAGCTCAGAATTTGCCTTACAGAAACTTAATGGAGGCCCAGATGTTCCACGATTTGGCTGGATGA 1410 47.94 MTRNNGFFAKAHNIQQQEQIFRDGLVGKVADLHQHRQFHLGNSKYLIPTQHLLNEFCSLGLRHGDGEKKGPKIKQWVEENATASLRKQSLQSLDFIELQKRKTRLFSMMEELERRYRHYCDQMKMVVSSFEAVAGEGAANVYSALACKALSRHFRCLKDGIVTQIQAVKKAMGEKDQQASVPGGSKGETPRLCILDQTLRRQRAFQQMSLMESHPWRPQRGLPERSVSILRAWLFEHFLHPYPSDVDKHILARQTSLSRSQVSNWFINARVRLWKPMVEDMYLEEVKEQENTLTSSDGGIDVNNIGRARPEDQKPTADQLLRINCDSLSSIINNPPKNDTKPSKTMQNHHQQQQQQQNFSSFGMTELDFSSYNHHSSGAVSLPSDSQVNHNFNGGGGGVSLTLGLQQHGGNGSGRLAFSSPPQTNSFFYTRDSMDECQPAVHYSLFDGEAQNLPYRNLMEAQMFHDLAG 469
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 15647714 15649842 - Bpe023608.1 Bpe08g01496 108372
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe08g01496 469 SMART HOX_1 216 280 IPR001356 GO:0003677
Bpe08g01496 469 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 420 - -
Bpe08g01496 469 CDD homeodomain 216 277 IPR001356 GO:0003677
Bpe08g01496 469 SMART prehox3 34 163 IPR006563 -
Bpe08g01496 469 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 5 420 - -
Bpe08g01496 469 Coils Coil 95 115 - -
Bpe08g01496 469 Pfam Homeobox KN domain 233 272 IPR008422 GO:0003677|GO:0006355
Bpe08g01496 469 MobiDBLite consensus disorder prediction 289 358 - -
Bpe08g01496 469 ProSiteProfiles 'Homeobox' domain profile. 213 276 IPR001356 GO:0003677
Bpe08g01496 469 SUPERFAMILY Homeodomain-like 217 282 IPR009057 -
Bpe08g01496 469 MobiDBLite consensus disorder prediction 320 358 - -
Bpe08g01496 469 Pfam Associated with HOX 40 161 IPR006563 -
Bpe08g01496 469 Gene3D - 219 281 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00665 Bpe-Chr11:5111635 Bpe08g01496 Bpe-Chr8:15647714 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21835 PF07526 POX 1.50E-40 No_clan Bpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe08g01496 - - pvy:116111178 606.675